View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_low_75 (Length: 238)

Name: NF7750_low_75
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_low_75
NF7750_low_75
[»] chr1 (2 HSPs)
chr1 (1-222)||(15239432-15239653)
chr1 (1-222)||(34053131-34053352)
[»] chr7 (2 HSPs)
chr7 (17-192)||(49041181-49041356)
chr7 (107-222)||(31333944-31334059)
[»] chr4 (7 HSPs)
chr4 (1-210)||(46572634-46572843)
chr4 (138-207)||(26453451-26453520)
chr4 (122-222)||(19742856-19742956)
chr4 (122-222)||(19797132-19797232)
chr4 (122-222)||(19539813-19539913)
chr4 (14-69)||(26453327-26453382)
chr4 (122-204)||(19671754-19671836)
[»] chr6 (1 HSPs)
chr6 (98-222)||(27776495-27776619)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15239432 - 15239653
Alignment:
Q  1 aaaaccatacattcctgattttaaattagcttttgagcacttttgtattcatgctggaggaagagctgttttggatgagttggagaaaaatcttgattta 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15239432 aaaaccatacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgagttggagaaaaatcttgattta 15239531  T
Q  101 agtgattggcatatggaaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15239532 agtgattggcatatggaaccatcaaggatgacactgaatagatttggtaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaag 15239631  T
Q  201 gaaggattaaaaaaggtgatag 222  Q
    | ||||||||||||||||||||    
T  15239632 ggaggattaaaaaaggtgatag 15239653  T

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Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34053131 - 34053352
Alignment:
Q  1 aaaaccatacattcctgattttaaattagcttttgagcacttttgtattcatgctggaggaagagctgttttggatgagttggagaaaaatcttgattta 100  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||  |     
T  34053131 aaaaccctacattcctgattttaaattagcttttgagcatttttgtattcatgctggtggaagagctgttttggatgaattagagaaaaatcttgacctt 34053230  T
Q  101 agtgattggcatatggaaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaag 200  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34053231 agtgattggcatatggaaccatcaagaatgacactaaatagatttggtaatacttctagtagttcattatggtatgaattggcttatactgaagctaaag 34053330  T
Q  201 gaaggattaaaaaaggtgatag 222  Q
    | ||||||| ||||||||||||    
T  34053331 ggaggattagaaaaggtgatag 34053352  T

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Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 49041356 - 49041181
Alignment:
Q  17 gattttaaattagcttttgagcacttttgtattcatgctggaggaagagctgttttggatgagttggagaaaaatcttgatttaagtgattggcatatgg 116  Q
    ||||| |||||||||||||| || || |||||||||||||| |||||||||||| | ||||||||| |||| |||||| |  | ||||| ||||||||||    
T  49041356 gatttcaaattagcttttgaacatttctgtattcatgctggtggaagagctgttcttgatgagttgcagaagaatcttcaactcagtgagtggcatatgg 49041257  T
Q  117 aaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactga 192  Q
    |||| ||  ||||||| ||| |||||||||| |||||||| || |||||  | ||||||||| |||||||||||||    
T  49041256 aaccgtctcggatgactctgcatagatttggaaacacttcaagcagttctctatggtatgaactggcttatactga 49041181  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 31333944 - 31334059
Alignment:
Q  107 tggcatatggaaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaagga 206  Q
    ||||||||||| || ||||| ||||||||  || | ||||| ||||| || || |||||| | ||||| ||||||||||| || ||||| || |||||||    
T  31333944 tggcatatggagccgtcaagaatgacactttatcgttttggtaacacctcgagcagttcactttggtacgaattggcttacacggaagccaatggaagga 31334043  T
Q  207 ttaaaaaaggtgatag 222  Q
    | || ||||| |||||    
T  31334044 tcaagaaaggagatag 31334059  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 46572634 - 46572843
Alignment:
Q  1 aaaaccatacattcctgattttaaattagcttttgagcacttttgtattcatgctggaggaagagctgttttggatgagttggagaaaaatcttg-attt 99  Q
    |||||| || ||||||||||| ||  |||||||||| || ||||| || ||||| ||||| |||||||||||||||||  |||||||||| |||| |  |    
T  46572634 aaaaccttatattcctgatttcaagctagcttttgaacatttttgcatccatgccggaggtagagctgttttggatgaactggagaaaaa-cttgcagct 46572732  T
Q  100 aagtgattggcatatggaaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaa 199  Q
    |  |   ||||||||||| ||||| |||||||||||  || | ||||| ||||| ||||| |||||| | ||||||||||||||||| || ||||| |||    
T  46572733 atctccatggcatatggagccatcgaggatgacactttatcgttttggaaacacatctagcagttcactttggtatgaattggcttacacagaagccaaa 46572832  T
Q  200 ggaaggattaa 210  Q
    || || |||||    
T  46572833 gggagaattaa 46572843  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 26453451 - 26453520
Alignment:
Q  138 atagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaaggat 207  Q
    ||||||||||||| ||||||   |||||| | ||||||||||||||||| | ||||||||||||||||||    
T  26453451 atagatttggcaatacttcttcaagttcaatttggtatgaattggcttacattgaagctaaaggaaggat 26453520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 19742956 - 19742856
Alignment:
Q  122 tcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaaggattaaaaaaggtgata 221  Q
    |||| |||||||||  |||||| ||| |||||||| ||||||||  | |||||||| ||||| |||  ||||||||||||||| || | |||||||||||    
T  19742956 tcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgata 19742857  T
Q  222 g 222  Q
    |    
T  19742856 g 19742856  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 19797132 - 19797232
Alignment:
Q  122 tcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaaggattaaaaaaggtgata 221  Q
    |||| |||||||||  |||||| ||| |||||||| ||||||||  | |||||||| ||||| |||  ||||||||||||||| || | |||||||||||    
T  19797132 tcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgata 19797231  T
Q  222 g 222  Q
    |    
T  19797232 g 19797232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 19539913 - 19539813
Alignment:
Q  122 tcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaaggattaaaaaaggtgata 221  Q
    |||| |||||||||  |||||| ||| |||||||| |||||||   | |||||||| ||||| |||  ||||||||||||||| || | |||||||||||    
T  19539913 tcaaagatgacactttatagatatggtaacacttcaagtagttttgtttggtatgagttggcatattgtgaagctaaaggaagaataagaaaaggtgata 19539814  T
Q  222 g 222  Q
    |    
T  19539813 g 19539813  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 26453327 - 26453382
Alignment:
Q  14 cctgattttaaattagcttttgagcacttttgtattcatgctggaggaagagctgt 69  Q
    |||||||||||  | ||||||||||| ||||||||||||||||| || ||||||||    
T  26453327 cctgattttaagcttgcttttgagcatttttgtattcatgctggtggtagagctgt 26453382  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 19671836 - 19671754
Alignment:
Q  122 tcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagctaaaggaag 204  Q
    |||| |||||||||  |||||| ||| |||||||| ||||||||  | |||||||| ||||| |||  |||||||||||||||    
T  19671836 tcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaaggaag 19671754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 27776619 - 27776495
Alignment:
Q  98 ttaagtgattggcatatggaaccatcaaggatgacactgaatagatttggcaacacttctagtagttcattgtggtatgaattggcttatactgaagcta 197  Q
    |||||||||||||| || || || ||||| ||||||||  |||||| ||| || ||||| ||||||||  | |||||||  |||||||||  ||||||||    
T  27776619 ttaagtgattggcaaattgagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagcta 27776520  T
Q  198 aaggaaggattaaaaaaggtgatag 222  Q
    | |||||||| |  |||||||||||    
T  27776519 agggaaggataaggaaaggtgatag 27776495  T

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