View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7750_low_80 (Length: 229)
Name: NF7750_low_80
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_80 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 1196561 - 1196782
Alignment:
| Q |
8 |
cttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaattgttcttgcatgcaaccatgtttatccacaaacctcaaaataat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1196561 |
cttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaatcgttcttgtatgcaaccatgtttatccacaaacctcaaaataat |
1196660 |
T |
|
| Q |
108 |
agccatttgctccctaagagattcatcacacgattcgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgtttcactttacaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1196661 |
agccatttgctccctaagagattcatcacacgatttgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgtttcactttacaa |
1196760 |
T |
|
| Q |
208 |
gacatgatttgcaaaagttcct |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1196761 |
gacatgatttgcaaaagttcct |
1196782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 1286889 - 1287108
Alignment:
| Q |
8 |
cttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaattgttcttgcatgcaaccatgtttatccacaaacctcaaaataat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
1286889 |
cttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaatcgttcttgtatgcaaccatgtttatccacaaacctcaa--taat |
1286986 |
T |
|
| Q |
108 |
agccatttgctccctaagagattcatcacacgattcgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgtttcactttacaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1286987 |
agccatttgctccctaagagattcatcacacgattcgtcaacaattatgaaaaatttagaatctccaatctcttcccgaatgtagtgtttcactttacaa |
1287086 |
T |
|
| Q |
208 |
gacatgatttgcaaaagttcct |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1287087 |
gacatgatttgcaaaagttcct |
1287108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 20554804 - 20555025
Alignment:
| Q |
8 |
cttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaattgttcttgcatgcaaccatgtttatccacaaacctcaaaataat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20554804 |
cttcttttttaagtgtgatagccatggtgtcatttacatgcacaagctcaaaaaatcgttcttgtatgcaaccatgtttatccacaaacctcaaaataat |
20554903 |
T |
|
| Q |
108 |
agccatttgctccctaagagattcatcacacgattcgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgtttcactttacaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20554904 |
agccatttgctccctaagagattcatcacgcgattcgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgtttcactttacaa |
20555003 |
T |
|
| Q |
208 |
gacatgatttgcaaaagttcct |
229 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20555004 |
gacatgatttgcaaaagttcct |
20555025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 27178205 - 27178136
Alignment:
| Q |
74 |
tgcaaccatgtttatccacaaacctcaaaataatagccatttgctccctaagagattcatcacacgattc |
143 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| ||| ||| ||||| || || ||||||||||| ||||| |
|
|
| T |
27178205 |
tgcaaccatttttatccacaaacatcaaaatagtagacatatgctctcttagggattcatcacaagattc |
27178136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University