View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_low_84 (Length: 218)

Name: NF7750_low_84
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_low_84
NF7750_low_84
[»] chr5 (15 HSPs)
chr5 (1-200)||(41315917-41316116)
chr5 (1-199)||(41321968-41322167)
chr5 (1-199)||(41323987-41324185)
chr5 (1-195)||(31188775-31188969)
chr5 (1-199)||(41331898-41332096)
chr5 (1-194)||(31224845-31225038)
chr5 (1-199)||(41366078-41366276)
chr5 (1-198)||(41327886-41328083)
chr5 (23-195)||(31185277-31185449)
chr5 (46-136)||(41369534-41369624)
chr5 (49-199)||(41285986-41286139)
chr5 (20-136)||(31178749-31178865)
chr5 (1-132)||(41336894-41337025)
chr5 (46-138)||(41359794-41359885)
chr5 (163-199)||(41430851-41430887)
[»] chr4 (1 HSPs)
chr4 (16-199)||(17249478-17249661)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 41316116 - 41315917
Alignment:
Q  1 tccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataaca 100  Q
    |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41316116 tccttcacttgcagttattgatttaacaagatttgtcacttcatcttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataaca 41316017  T
Q  101 catatctttcgtagttgcctccaccgttctccatatatcgagaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggcctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||||||    
T  41316016 catatctttcgtagttgcctccaccgttctccatatatcgagaatataacatcagtagcattgtaactccatattgtagacaaaagaaggtttggcctac 41315917  T

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Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 41322167 - 41321968
Alignment:
Q  1 tccttcacttaca-gttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataac 99  Q
    ||||||||||| | |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||| |||||||||||||||||    
T  41322167 tccttcacttaaaagttattgatttaacaagatttgtcacttcatcttctcttatagacctaaatgattggatgcgctttgcacttaatagttctataac 41322068  T
Q  100 acatatctttcgtagttgcctccaccgttctccatatatcgagaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggccta 199  Q
     |||||||||||||||| |||||||| ||||| ||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  41322067 gcatatctttcgtagttccctccaccattctcgatacatcgaaaatataacatcagtagcattgtaactaaatattgtagacaaaagaaggtttggccta 41321968  T

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Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 41324185 - 41323987
Alignment:
Q  1 tccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataaca 100  Q
    |||||||||| ||||||||||| || ||||||| |  ||||||| ||||||| | |||||||||||||||||||||||||| |||||||| |||| ||||    
T  41324185 tccttcacttgcagttattgatgtagcaagatttgatacttcatcttctcttgtggacctaaatgattggacacgctttgcacttaatagctctacaaca 41324086  T
Q  101 catatctttcgtagttgcctccaccgttctccatatatcgagaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggccta 199  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||    
T  41324085 catatctttcgtagttgcctccaccgttctccatatttagagaatataacatcagtagcattgtaagttaatattgtggccaaaagaaggtttggccta 41323987  T

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Target: chr5; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 31188775 - 31188969
Alignment:
Q  1 tccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataaca 100  Q
    |||||||||| ||| |||||||||||||||||| | ||| || | |||||||||| ||||||| ||||||||||||||||| ||||||| || || ||||    
T  31188775 tccttcacttgcagatattgatttaacaagatttgacacctcttcttctcttatatacctaaacgattggacacgctttgcacttaataattgtaaaaca 31188874  T
Q  101 catatctttcgtagttgcctccaccgttctccatatatcgagaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttgg 195  Q
    |||||||||||||||||||||||  |||||||||||   ||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||    
T  31188875 catatctttcgtagttgcctccagtgttctccatatggagagaagataatatcaatagcattgtaactaaatattgtggacaaaagaaggtttgg 31188969  T

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Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 41332096 - 41331898
Alignment:
Q  1 tccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataaca 100  Q
    |||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  41332096 tccttcacttgcagttattgatttaacaagatttgtcacttcatcttctcttatggacctaaatgattggacacgctttgcacttaatagctctataaca 41331997  T
Q  101 catatctttcgtagttgcctccaccgttctccatatatcgagaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggccta 199  Q
    ||||||||||||| |||||||||  |||| |  ||| | | ||| | || ||  ||||||| ||||||  ||||||| |||||||||||||||||||||    
T  41331996 catatctttcgtacttgcctccaatgttcacagtatgtagcgaagacaatatttgtagcattgtaactccatattgttgacaaaagaaggtttggccta 41331898  T

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Target: chr5; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 31225038 - 31224845
Alignment:
Q  1 tccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataaca 100  Q
    |||||||||| ||| |||||||| ||||||||| | ||| || | |||||||||| ||||||||||||||||||||||||| ||||||| || || ||||    
T  31225038 tccttcacttgcagatattgattcaacaagatttgacacctcttcttctcttatatacctaaatgattggacacgctttgcacttaataattgtaaaaca 31224939  T
Q  101 catatctttcgtagttgcctccaccgttctccatatatcgagaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttg 194  Q
    ||||||||||||| |||||||||  |||||||||||   ||||| | || |  |||||||| ||||||||||||||||||||||||||||||||    
T  31224938 catatctttcgtatttgcctccagtgttctccatatgcagagaaaacaatactagtagcattgtaactaaatattgtggacaaaagaaggtttg 31224845  T

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Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 41366276 - 41366078
Alignment:
Q  1 tccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataaca 100  Q
    |||||||||| |||||||||||||||||||||| | ||| || | |||||| || ||||||||||||| |||||| ||||| |||||||| |||  ||||    
T  41366276 tccttcacttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgcacttaatagctcttcaaca 41366177  T
Q  101 catatctttcgtagttgcctccaccgttctccatatatcgagaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggccta 199  Q
    ||||| ||||||| |||||||||   |||||||| | | |||||   || ||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  41366176 catatttttcgtaattgcctccaattttctccatgtgtagagaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggccta 41366078  T

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Target: chr5; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 41328083 - 41327886
Alignment:
Q  1 tccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataaca 100  Q
    |||||||||| ||||||||||||||||||| || | ||| |||| ||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||    
T  41328083 tccttcacttgcagttattgatttaacaaggtttgacacctcatcttctcttatggacctaaatgattgtacacgctttgcacttaatagctctataaca 41327984  T
Q  101 catatctttcgtagttgcctccaccgttctccatatatcgagaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggcct 198  Q
    ||||||||||||| |||||||||  |||| || |||   | |||   ||  || ||||||| ||||||| ||||  ||||||||||||||||||||||    
T  41327983 catatctttcgtaattgcctccaatgttcaccgtatgcagcgaaggcaatgtctgtagcattgtaactatatatattggacaaaagaaggtttggcct 41327886  T

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Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 31185277 - 31185449
Alignment:
Q  23 ttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataacacatatctttcgtagttgcctcc 122  Q
    ||||||||||| | ||| || | |||||||||| |||||||||||| |||||||||||| ||||||| || || |  |||||||||||| ||||||||||    
T  31185277 ttaacaagatttgacacctcttcttctcttatatacctaaatgattagacacgctttgcacttaataattgtaaagtacatatctttcgcagttgcctcc 31185376  T
Q  123 accgttctccatatatcgagaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttgg 195  Q
    |  ||||| ||||| | |||||   || | ||||||| | |||||||||||||||||||||||||| ||||||    
T  31185377 aatgttcttcatatgtagagaaagcaataccagtagcgttgtaactaaatattgtggacaaaagaaagtttgg 31185449  T

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Target: chr5; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 41369624 - 41369534
Alignment:
Q  46 ttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataacacatatctttcgtagttgcctccaccgttctccatat 136  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||| |||| |||||||||||||||||||||||||||  |||||||||||    
T  41369624 ttctcttatggacctaaatgattggacacgctttgcatttaatagctctacaacacatatctttcgtagttgcctccaatgttctccatat 41369534  T

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Target: chr5; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 41286139 - 41285986
Alignment:
Q  49 tcttatagacctaaatgattggacacgctttgcgcttaatagttctataacacatatctttcgtagttgcctccaccgttctccatat---atcgagaat 145  Q
    ||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||| |||||| ||||| |||||  ||||||||| |   || ||||||    
T  41286139 tcttatagaactaaatgattgaacacgctttgcacttaatagctctataacacatagctttcgcagttgtctccagtgttctccatgtataatagagaat 41286040  T
Q  146 ataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggccta 199  Q
      || ||| |||  || |||| ||| |||||||| |||||||||||||||||||    
T  41286039 gcaatatctgtattattgtaagtaagtattgtgggcaaaagaaggtttggccta 41285986  T

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Target: chr5; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 31178749 - 31178865
Alignment:
Q  20 gatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataacacatatctttcgtagttgcc 119  Q
    ||||||| |||||| | ||| || | |||||||||| ||||||||||||||||| ||||||| ||||||| || || |  |||||||||||| |||||||    
T  31178749 gatttaataagatttgacacctcttattctcttatatacctaaatgattggacatgctttgcacttaataattgtaaagtacatatctttcgcagttgcc 31178848  T
Q  120 tccaccgttctccatat 136  Q
    ||||  |||||||||||    
T  31178849 tccagtgttctccatat 31178865  T

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Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41337025 - 41336894
Alignment:
Q  1 tccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataaca 100  Q
    ||||||| || ||| |||||||||||||||||  | ||| || | |||||||||  | ||||| ||||||||||| ||||| |||||||| |||| ||||    
T  41337025 tccttcatttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcacttaatagctctacaaca 41336926  T
Q  101 catatctttcgtagttgcctccaccgttctcc 132  Q
    ||||||||||||| ||| |||||  |||||||    
T  41336925 catatctttcgtaattgtctccaaagttctcc 41336894  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 41359885 - 41359794
Alignment:
Q  46 ttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataacacatatctttcgtagttgcctccaccgttctccatatat 138  Q
    ||||||||| |||||||||||||||||||  ||| | |||||||| ||| ||||||| | |||||| ||||| |||||  |||||||||||||    
T  41359885 ttctcttatggacctaaatgattggacac-attttcacttaatagctctgtaacacacaactttcggagttgtctccagtgttctccatatat 41359794  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 41430887 - 41430851
Alignment:
Q  163 gtaactaaatattgtggacaaaagaaggtttggccta 199  Q
    |||| |||||||||| |||||||||||||||||||||    
T  41430887 gtaagtaaatattgtagacaaaagaaggtttggccta 41430851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 17249478 - 17249661
Alignment:
Q  16 tattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaatagttctataacacatatctttcgtagt 115  Q
    |||||||||||||||||    |||||| | ||||||||  || ||||| ||||||||||| ||  | ||||| |||| |  ||| ||||||||||| |||    
T  17249478 tattgatttaacaagatctaacacttcttcttctcttaccgatctaaacgattggacacgtttaacacttaaaagttgttcaacgcatatctttcgcagt 17249577  T
Q  116 tgcctccaccgttctccatatatcgagaatataacatcagtagcatcgtaactaaatattgtggacaaaagaaggtttggccta 199  Q
    ||| ||||  ||||||||||| | ||||||| || ||||| ||||| |||| ||||||||||||||||||||||||| ||||||    
T  17249578 tgcttccagtgttctccatatgtagagaatacaatatcagaagcattgtaagtaaatattgtggacaaaagaaggttaggccta 17249661  T

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