View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_low_85 (Length: 214)

Name: NF7750_low_85
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_low_85
NF7750_low_85
[»] chr7 (5 HSPs)
chr7 (18-214)||(5309610-5309806)
chr7 (18-214)||(5314422-5314623)
chr7 (18-214)||(5283778-5283981)
chr7 (81-214)||(5290146-5290279)
chr7 (81-214)||(5302036-5302169)
[»] chr5 (6 HSPs)
chr5 (78-214)||(1504336-1504472)
chr5 (93-214)||(1481697-1481818)
chr5 (93-214)||(1491587-1491708)
chr5 (85-214)||(1477578-1477707)
chr5 (129-208)||(1485469-1485548)
chr5 (105-206)||(1496809-1496910)
[»] chr1 (3 HSPs)
chr1 (71-214)||(44128143-44128286)
chr1 (71-214)||(44132348-44132491)
chr1 (71-214)||(44140770-44140913)
[»] chr2 (1 HSPs)
chr2 (102-214)||(24165501-24165613)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 5309610 - 5309806
Alignment:
Q  18 tcctttactacaacaagtactaaaactcattgtgttcaaattttagtacttatatttgcaactaaagatatcaaaatggtgagtgtgtctgaaattcgta 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5309610 tcctttactacaacaagtactaaaactcattttgttcaaattttagtacttatatttgcaactaaagatatcaaaatggtgagtgtgtctgaaattcgta 5309709  T
Q  118 atgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgatttttactt 214  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5309710 atgctcaaagagcagaaggtcctgcaactattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgatttttactt 5309806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 5314422 - 5314623
Alignment:
Q  18 tcctttactacaacaagtact-aaaactcattgtgttcaaattttagtacttatatttgcaactaaagatatc-----aaaatggtgagtgtgtctgaaa 111  Q
    |||||| |||||||||||||| |||||||||||||||||||||| |||||||  ||||   || ||||||||      || |||||||||||||||||||    
T  5314422 tccttttctacaacaagtactgaaaactcattgtgttcaaatttcagtacttc-attttataccaaagatatatcaagaatatggtgagtgtgtctgaaa 5314520  T
Q  112 ttcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgattttta 211  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5314521 ttcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgattttta 5314620  T
Q  212 ctt 214  Q
    |||    
T  5314621 ctt 5314623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 5283778 - 5283981
Alignment:
Q  18 tcctttactacaaca--agtact-aaaactcattgtgttcaaattttagtacttatatttgcaactaaagatatc-----aaaatggtgagtgtgtctga 109  Q
    |||||||||||||||  |||||| |||||||||||||||||||||| |||||||  |||| | || ||||||||      || |||||||||||||||||    
T  5283778 tcctttactacaacacaagtactgaaaactcattgtgttcaaatttcagtacttc-attttctaccaaagatatatcaagaatatggtgagtgtgtctga 5283876  T
Q  110 aattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgatttt 209  Q
    ||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5283877 aattcgtaaagctcaaagggcagaaggccctgcaaccatcttggccattgggactgcaaatccagcaaattgtgttgaacaaagcacgtatcctgatttt 5283976  T
Q  210 tactt 214  Q
    |||||    
T  5283977 tactt 5283981  T

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Target: chr7; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 5290279 - 5290146
Alignment:
Q  81 aaagatatcaaaatggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaatt 180  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || || |||||||| |||||||||||||||||||    
T  5290279 aaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaatt 5290180  T
Q  181 gtgttgaacaaagcacatatcctgatttttactt 214  Q
    |||||||||||||||| |||||||||||||||||    
T  5290179 gtgttgaacaaagcacttatcctgatttttactt 5290146  T

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Target: chr7; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 5302036 - 5302169
Alignment:
Q  81 aaagatatcaaaatggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaatt 180  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || || |||||||| |||||||||||||||||||    
T  5302036 aaagatatcaaaatggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaatt 5302135  T
Q  181 gtgttgaacaaagcacatatcctgatttttactt 214  Q
    |||||||||||||||| |||||||||||||||||    
T  5302136 gtgttgaacaaagcacttatcctgatttttactt 5302169  T

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Target: chr5 (Bit Score: 97; Significance: 7e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 1504336 - 1504472
Alignment:
Q  78 actaaagatatcaaaatggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaa 177  Q
    |||||| ||| ||| ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  1504336 actaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccaccaa 1504435  T
Q  178 attgtgttgaacaaagcacatatcctgatttttactt 214  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1504436 attgtgttgaacaaagcacatatcctgatttctactt 1504472  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 1481697 - 1481818
Alignment:
Q  93 atggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaa 192  Q
    ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  1481697 atggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaacaaa 1481796  T
Q  193 gcacatatcctgatttttactt 214  Q
    ||||||||||||||||||||||    
T  1481797 gcacatatcctgatttttactt 1481818  T

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Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 1491587 - 1491708
Alignment:
Q  93 atggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaa 192  Q
    ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  1491587 atggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaacaaa 1491686  T
Q  193 gcacatatcctgatttttactt 214  Q
    ||||||||||||||||||||||    
T  1491687 gcacatatcctgatttttactt 1491708  T

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Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 1477578 - 1477707
Alignment:
Q  85 atatcaaaatggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgt 184  Q
    ||||||| ||||||||||| ||||||||||| || ||||| || |||||||| ||||| |||||  |||||||||| |||||||||||||| || |||||    
T  1477578 atatcaagatggtgagtgtatctgaaattcgcaaggctcagagggcagaaggccctgccaccatcatggccattggcactgcaaatccagccaactgtgt 1477677  T
Q  185 tgaacaaagcacatatcctgatttttactt 214  Q
    ||||||||||||||||||||||||||||||    
T  1477678 tgaacaaagcacatatcctgatttttactt 1477707  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 1485469 - 1485548
Alignment:
Q  129 gcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgattt 208  Q
    |||||||| ||||||| ||| |||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||    
T  1485469 gcagaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcacatatcctgattt 1485548  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 1496809 - 1496910
Alignment:
Q  105 tctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctg 204  Q
    ||||||||||| |  |||||||| |||||||| ||| |||| || || || ||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  1496809 tctgaaattcgaagggctcaaagggcagaaggccctacaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 1496908  T
Q  205 at 206  Q
    ||    
T  1496909 at 1496910  T

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Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 44128143 - 44128286
Alignment:
Q  71 atttgcaactaaagatatcaaaatggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaat 170  Q
    |||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||     
T  44128143 atttgctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaac 44128242  T
Q  171 ccagcaaattgtgttgaacaaagcacatatcctgatttttactt 214  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  44128243 ccagccaattgtgttgaacaaagcacatatcctgatttctactt 44128286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 44132348 - 44132491
Alignment:
Q  71 atttgcaactaaagatatcaaaatggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaat 170  Q
    |||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||     
T  44132348 atttgctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaac 44132447  T
Q  171 ccagcaaattgtgttgaacaaagcacatatcctgatttttactt 214  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  44132448 ccagccaattgtgttgaacaaagcacatatcctgatttctactt 44132491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 44140770 - 44140913
Alignment:
Q  71 atttgcaactaaagatatcaaaatggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaat 170  Q
    |||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||     
T  44140770 atttgctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaac 44140869  T
Q  171 ccagcaaattgtgttgaacaaagcacatatcctgatttttactt 214  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  44140870 ccagccaattgtgttgaacaaagcacatatcctgatttctactt 44140913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 24165613 - 24165501
Alignment:
Q  102 gtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatc 201  Q
    ||||||||||||||||| |||||||| |||||||| |||||||| || ||||||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  24165613 gtgtctgaaattcgtaaggctcaaagggcagaaggccctgcaactatcttggccattggcactgcaaatccaccaaactgtgttgaacaaagcacatatc 24165514  T
Q  202 ctgatttttactt 214  Q
    ||||||| |||||    
T  24165513 ctgatttctactt 24165501  T

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