View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_9 (Length: 525)
Name: NF7750_low_9
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_9 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 47837219 - 47836978
Alignment:
| Q |
1 |
gacatttggggttctgaaatgttatgttttggtgagaagatttgaacaaacatggccgaaatcgtttgatgcagttatgatgcaagcatacaagtgattt |
100 |
Q |
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| T |
47837219 |
gacatttggggttctgaaattttatattttggtgagaagatttgaacaaacatggccgaaattgtttgatgcagttatgatgcaagcatacaagtgattt |
47837120 |
T |
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| Q |
101 |
aagatcacactgcaattgcgatgacgatgtagaggctaccacatcagcgatattagcggtcgcagttgcagatgtggaccgcgatttgaaaccatggtaa |
200 |
Q |
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| T |
47837119 |
tagatcacactgcaattgcgatgacgatgtagaggctaccacatcagcgatattagcggtcgcagttgcagatgtggaccgcgatttgaaaccatggtaa |
47837020 |
T |
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| Q |
201 |
taatagtcatttaaggcactctgtaattttcttataatgaag |
242 |
Q |
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| T |
47837019 |
taatagtcatttaaggcacactgtaattttcttataatgaag |
47836978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 375 - 509
Target Start/End: Complemental strand, 47836847 - 47836713
Alignment:
| Q |
375 |
tatagaagcaggtaatatttgacccttgtgtgtgcaatatcttacgttttaagtatctctgtcaagaatgggaacattttctcaagcttttctggttgag |
474 |
Q |
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| T |
47836847 |
tatagaagcaggtaatatttgacccttgtgtgtgcaatatcttacgttttaagtatctctgtcaggaatgggaacattttctcaagcttttcaggttgag |
47836748 |
T |
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| Q |
475 |
tcaagccttgtacaaatgtgacaggggcgaggaat |
509 |
Q |
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| T |
47836747 |
tcaagccttgtacaaatgtgacaggggcgaggaat |
47836713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 38750795 - 38750884
Alignment:
| Q |
29 |
ttggtgagaagatttgaacaaacatggccgaaatcgtttgatgcagttatgatgcaagcatacaagtgatttaagatcacactgcaattg |
118 |
Q |
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| T |
38750795 |
ttggtgagaagatttgaacaaacattaccaaaatcgtgtgatgcagttccgatgcgaccatacacgtgattgaagatcacaatgctattg |
38750884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 49885 - 49972
Alignment:
| Q |
33 |
tgagaagatttgaacaaacatggccgaaatcgtttgatgcagttatgatgcaagcatacaagtgatttaagatcacactgcaattgcg |
120 |
Q |
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| T |
49885 |
tgagaaggtttgaacaaacatggccgaaatcgtgttatgcagttacgatgcgcccatacacatgattgaagataacactacacttgcg |
49972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 487
Target Start/End: Original strand, 4706681 - 4706753
Alignment:
| Q |
415 |
cttacgttttaagtatctctgtcaagaatgggaacattttctcaagcttttctggttgagtcaagccttgtac |
487 |
Q |
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| T |
4706681 |
cttactttttaagtacccctgccagaaaagggaacattttctgaagtttttctagttgagtcaagccttgtac |
4706753 |
T |
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