View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7751_low_2 (Length: 554)
Name: NF7751_low_2
Description: NF7751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7751_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 36608276 - 36607757
Alignment:
| Q |
18 |
aattagttatgcaaatcttaatctcaaattgaagtttcaaggtttaatagcattcaaagaactaaggttcaatacaaaatagaaataaactgacataaaa |
117 |
Q |
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| T |
36608276 |
aattagttatgcaaatcctaatctcaaattgaagtttcaaggtttaatagcattcaaagaactaaggttcaatacaaaatagaaataaactgacataaaa |
36608177 |
T |
|
| Q |
118 |
ataaacggtctaaatgtttctaaactatatgttaaattacacgtgattatcaaaacattagtg-aaaaaacaacagtacaacgaagctcattagatagca |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36608176 |
ataaacggtctaaatgtttctaaactatctgttaaattacatgtgattattaaaacattagtggaaaaaacaacagtacaacgaagctcattagatagca |
36608077 |
T |
|
| Q |
217 |
tcagtcatgtgacataacagaatcattgtcgggtatatctgactc-tcgccatttacgttgcacaatgtatcattaccaaaattgtaaaaaccatcaatt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36608076 |
tcagtcatgtgacataacagaatcattgtcgggtatatctgactcctcgccatttacgttgcacaatgtatcattaccaaaattgtaaaaaccatcaact |
36607977 |
T |
|
| Q |
316 |
gataacagtgtcgcgtttagtttaactgactccaaccgaattcctaactcgtctgtgatttgagatgtttttacacaaaacagcaattgcaattatgtta |
415 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36607976 |
gataacattgtcacgtttagtttaactgactccaaccgaattcctaactcgtctgtgatttgagatgtttttacacaaaacagcaattgcaattatgtta |
36607877 |
T |
|
| Q |
416 |
gaaaaactttctgatcccacatttaagtatcttagtttgttaaaattcaagagaaatggtttaccatggtatatacacacttggatatttgatatgcaag |
515 |
Q |
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| T |
36607876 |
gaaaaactttctgatcctacatttaagtatcttagtttgttaaaattcaagagaaatggtttaccatggtatatacacacttggatatttgatatgcaag |
36607777 |
T |
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| Q |
516 |
acctcttcctcgctattgtc |
535 |
Q |
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| T |
36607776 |
actttttcctcgctgttgtc |
36607757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 3006207 - 3006086
Alignment:
| Q |
19 |
attagttatgcaaatcttaatctcaaattgaagtttcaaggtttaatagcattcaaagaactaaggttcaatacaaaatagaaataaactgacataaaaa |
118 |
Q |
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||||||| ||||||| |||||||||| | || ||||||||||||||| |||||||| |||||||||||||||||||| | |||||||| |||||||||| |
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| T |
3006207 |
attagttttgcaaatgttaatctcaa-tgcaactttcaaggtttaataacattcaaacaactaaggttcaatacaaaacacaaataaacggacataaaaa |
3006109 |
T |
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| Q |
119 |
taaacggtctaaatgtttctaaa |
141 |
Q |
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||||||||||||||||||||||| |
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| T |
3006108 |
taaacggtctaaatgtttctaaa |
3006086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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