View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7751_low_3 (Length: 494)
Name: NF7751_low_3
Description: NF7751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7751_low_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 256 - 494
Target Start/End: Original strand, 20770394 - 20770638
Alignment:
| Q |
256 |
cttaactttaaactagcttctctttcggttcataagcaaatacaaacatcaactaaaatagttagt-------atatattcatatcataaagttaataag |
348 |
Q |
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| T |
20770394 |
cttaactttaaactaatttctccttcggttcataagcaaatacaaacatcaactaaa-tagttagttgactatatatattcagatcataaagttaataag |
20770492 |
T |
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| Q |
349 |
tctcaataaacatcttaagcaaatacaaacatcaagttgacatctagcaaagtgtacatcattcacacattactatattaacaacacaccattggatatc |
448 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20770493 |
tctcaatcaacatcttaagcaaatacaaacatcaagctgacatttagcaaagtgtacatcattcacacattactatattaacaacacaccattggatatc |
20770592 |
T |
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| Q |
449 |
acatattcaaatattcacatcttcacataacacatagtcaaatttt |
494 |
Q |
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| T |
20770593 |
acatattcaaatattcacatcttcacataacacatagttaaatttt |
20770638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 20770131 - 20770346
Alignment:
| Q |
15 |
acgttaaacaaatttgtgagagactgttgctttcaaaactaaacaacatcaacttataactagaattaaacaaatttactacgacacaactgctttacca |
114 |
Q |
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| T |
20770131 |
acgttaaacaaatttgtgaga--cttttaatttcaaaactaaacaacgtcaacttataactaaaattaaacaaatttactacgacacaactactttacca |
20770228 |
T |
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| Q |
115 |
agttgaccaaatgttacttaagctgacataaaattcacaaacgaaaagtgttgaatgttaataatatgttatggtattaaaataccaatatacaaaatta |
214 |
Q |
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| T |
20770229 |
agtttatcaaatgttacttaagctgacataaaattcacaaatgaaaagtgttgaatgttaataatatattatggtattaaaataccaatatacaaaatta |
20770328 |
T |
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| Q |
215 |
taacatgaaaacatcaat |
232 |
Q |
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|||||| ||||||||||| |
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| T |
20770329 |
taacatcaaaacatcaat |
20770346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 377 - 483
Target Start/End: Original strand, 9609584 - 9609689
Alignment:
| Q |
377 |
acatcaagttgacatctagcaaagtgtacatcattcacacattactatattaacaacacaccattggatatcacatattcaaatattcacatcttcacat |
476 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||| || || || ||| ||||||||| ||||||||||| ||||||||||| |
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| T |
9609584 |
acatcaagttgacatttagcaaagtgtacaacattcacacattactataacaa-aaatcatcatcaaatatcacatcttcaaatattcgcatcttcacat |
9609682 |
T |
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| Q |
477 |
aacacat |
483 |
Q |
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||||||| |
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| T |
9609683 |
aacacat |
9609689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 494
Target Start/End: Original strand, 20770719 - 20770764
Alignment:
| Q |
449 |
acatattcaaatattcacatcttcacataacacatagtcaaatttt |
494 |
Q |
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| T |
20770719 |
acatattcaaatattcacatcttcgcataacacatcgtcaaatttt |
20770764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 483
Target Start/End: Complemental strand, 20739165 - 20739060
Alignment:
| Q |
377 |
acatcaagttgacatctagcaaagtgtacatcattcacacattactatattaacaacacaccattggatatcacatattcaaatattcacatcttcacat |
476 |
Q |
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||||||||||||||| ||||||| ||||||| |||||||| |||||| | ||| | |||| |||| |||||||||| ||||| ||||||||||||| || |
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| T |
20739165 |
acatcaagttgacatgtagcaaaatgtacatgattcacac-ttactacaataaaagcacatcattcgatatcacatcttcaattattcacatcttcgtat |
20739067 |
T |
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| Q |
477 |
aacacat |
483 |
Q |
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||||||| |
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| T |
20739066 |
aacacat |
20739060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 491
Target Start/End: Complemental strand, 28843456 - 28843347
Alignment:
| Q |
377 |
acatcaagttgacatctagcaaagtgtacatcattcacacattactatattaacaacacaccattggatatcacatattcaaatattcacatcttcacat |
476 |
Q |
| |
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||||||||||||||| |||||||||| |||| ||||||| | ||||| | ||| | |||| ||||| || ||||||||||||||| ||||||| || |
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| T |
28843456 |
acatcaagttgacatgtagcaaagtggacattattcacatactactacaataaaagcacatcattgaat-----atattcaaatattcatatcttcatat |
28843362 |
T |
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| Q |
477 |
aacacatagtcaaat |
491 |
Q |
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| T |
28843361 |
aacacatcgtcaaat |
28843347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 483
Target Start/End: Complemental strand, 20739041 - 20739013
Alignment:
| Q |
455 |
tcaaatattcacatcttcacataacacat |
483 |
Q |
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| T |
20739041 |
tcaaatattcacatcttcacataacacat |
20739013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 493
Target Start/End: Complemental strand, 19467345 - 19467231
Alignment:
| Q |
379 |
atcaagttgacatctagcaaagtgtacatcattcacacattactatattaacaacacaccattggatatcacatattcaaatattcacatcttcacataa |
478 |
Q |
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||||||||||||| ||| | || ||||||||||||||| |||||| | ||| | |||| ||||| || |||||| | |||||||||||||||| ||| |
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| T |
19467345 |
atcaagttgacatgtagtagagcgtacatcattcacaccttactacaataaaagcacatcattgaatgtcacatcataaaatattcacatcttcgtgtaa |
19467246 |
T |
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| Q |
479 |
cacatagtcaaattt |
493 |
Q |
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| T |
19467245 |
cacatagtcaaattt |
19467231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 490
Target Start/End: Complemental strand, 19467223 - 19467188
Alignment:
| Q |
455 |
tcaaatattcacatcttcacataacacatagtcaaa |
490 |
Q |
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| T |
19467223 |
tcaaatattcacatcttcacataacacattgtcaaa |
19467188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 492
Target Start/End: Original strand, 3377553 - 3377667
Alignment:
| Q |
378 |
catcaagttgacatctagcaaagtgtacatcattcacacattactatattaacaacacaccattggatatcacatattcaaatattcacatcttcacata |
477 |
Q |
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|||||||| |||| ||| |||| |||||||||||||||||||||| | ||| ||||| |||| || |||||| |||||||||||||||| | ||| |
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| T |
3377553 |
catcaagtagacaagtagtaaagagtacatcattcacacattactacaataaagacacatcattaaatgtcacatcttcaaatattcacatccttgtata |
3377652 |
T |
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| Q |
478 |
acacatagtcaaatt |
492 |
Q |
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|||||| |||||||| |
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| T |
3377653 |
acacatcgtcaaatt |
3377667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 3377670 - 3377714
Alignment:
| Q |
449 |
acatattcaaatattcacatcttcacataacacatagtcaaattt |
493 |
Q |
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|||| ||||||||||||||||||||||||| |||| |||||||| |
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| T |
3377670 |
acatcttcaaatattcacatcttcacataatacatcatcaaattt |
3377714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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