View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7751_low_6 (Length: 292)
Name: NF7751_low_6
Description: NF7751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7751_low_6 |
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| [»] chr1 (3 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 165 - 292
Target Start/End: Original strand, 38903799 - 38903926
Alignment:
| Q |
165 |
gttcatgtaaattgaacaacgacaatgtttgatgtgt-gttcatatgattgttaatgaccaatgatgataaatcataaggcttgtttctcaaaacattcg |
263 |
Q |
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||||||||||||||||||| |||||| |||||||| | ||| || ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38903799 |
gttcatgtaaattgaacaatgacaatttttgatgttttgtttatttgattataaatgaccaatgatgataaatc-taaggcttgtttctcaaaacattcg |
38903897 |
T |
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| Q |
264 |
cagtggccgcctaagagctttcgcctttc |
292 |
Q |
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| T |
38903898 |
cagtggccgcctaagaactttcgcctttc |
38903926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 38904194 - 38904260
Alignment:
| Q |
223 |
caatgatgataaatcataaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctt |
290 |
Q |
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| T |
38904194 |
caatgatgataaatc-taaggcttgtttctcaaaacattcgcagtggctgcctaatagctttcgcctt |
38904260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 38903516 - 38903566
Alignment:
| Q |
240 |
aaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctt |
290 |
Q |
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| T |
38903516 |
aaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctt |
38903566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 33032427 - 33032509
Alignment:
| Q |
209 |
tgattgttaatgaccaatgatgataaatcataaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttc |
292 |
Q |
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| T |
33032427 |
tgattgtaaatgaccaatgatgataa-tattaaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttc |
33032509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 33032186 - 33032236
Alignment:
| Q |
240 |
aaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctt |
290 |
Q |
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| T |
33032186 |
aaggcttgtttctcaaaacattcgcagtggccgcctaagaactttcgcctt |
33032236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 33050800 - 33050846
Alignment:
| Q |
246 |
tgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttc |
292 |
Q |
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| T |
33050800 |
tgtttctcaaaacattcgcagtggccgcctaagagctttcgcctttc |
33050846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 53017295 - 53017229
Alignment:
| Q |
223 |
caatgatgataaatcataaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctt |
290 |
Q |
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| T |
53017295 |
caatgatgataatcca-aaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctt |
53017229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 53017480 - 53017429
Alignment:
| Q |
239 |
taaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctt |
290 |
Q |
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| T |
53017480 |
taaggcttgtttctcaaaacattcgcagtggccgaccaagagctttcgcctt |
53017429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 43522007 - 43522058
Alignment:
| Q |
239 |
taaggcttgtttctcaaaacattcgcagtggccgcctaagagctttcgcctt |
290 |
Q |
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| T |
43522007 |
taaggcttgtttctcaaaacattcgcagtggccgcctaagaactttcgcctt |
43522058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 43522193 - 43522238
Alignment:
| Q |
234 |
aatcataaggcttgtttctcaaaacattcgcagtggccgcctaaga |
279 |
Q |
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| T |
43522193 |
aatcctaaggcttgtttctcaaaacattcgcattggccgcctaaga |
43522238 |
T |
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