View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7751_low_7 (Length: 284)
Name: NF7751_low_7
Description: NF7751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7751_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 1575764 - 1575999
Alignment:
| Q |
41 |
ttgctcgcttctagttcgccttggctcgtccaacaaattgctttgaaccagtattatttgtaaatcaaaactaaataccttcaaaaaatgatggaaaata |
140 |
Q |
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| T |
1575764 |
ttgctcgcttctagttcgccttggctcgtccaacaaattgctttgaacccgtattatttgtaaatcaaa-ctaaataccttcaaaaaatgatggaaaata |
1575862 |
T |
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| Q |
141 |
tacaatagcagcttactggactaaaactataattgttacatgtttataatacatttgannnnnnnnnnnnnnnnacccagattacttgcaaaataagtta |
240 |
Q |
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| T |
1575863 |
tacaatagcagcttactggactaaaactataattgttacatgtttatagtaaattgga-------tttttttttacccatattacttgcaaaataagtta |
1575955 |
T |
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| Q |
241 |
acaagtgttatggaaattaacatggttatgacacttatcaataa |
284 |
Q |
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| T |
1575956 |
acaagtgttatggaaattaacatgattatgacacttatcaataa |
1575999 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 3472527 - 3472468
Alignment:
| Q |
221 |
attacttgcaaaataagttaacaagtgttatggaaattaacatggttatgacacttatca |
280 |
Q |
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| T |
3472527 |
attacatgcaaaacaagttaacaagtgctatgaaaattaacatgattttgacacttatca |
3472468 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 27874474 - 27874429
Alignment:
| Q |
219 |
agattacttgcaaaataagttaacaagtgttatggaaattaacatg |
264 |
Q |
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| T |
27874474 |
agattacttgcaaaataagttaataagtgctatgaatattaacatg |
27874429 |
T |
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