View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7751_low_9 (Length: 240)
Name: NF7751_low_9
Description: NF7751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7751_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 996991 - 997208
Alignment:
| Q |
17 |
aacaactccatcacaatcatcatcgtaaagctccaagtggatgaaattatggaagataggaaagccatcctaaattaattatgtagaaagacaaagtatc |
116 |
Q |
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| T |
996991 |
aacaactccatcacaatcatc---gtaaagctccaagtgggtcaaattatggaagataggaaagccatcctaaatt----atgtagaaagacaaagtatc |
997083 |
T |
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| Q |
117 |
agaaattaagaaaaaattacctaaaatacaatgaagaactttaagcaatggaaatccaccaaaatcaaaagaaaaaccgtcctccacgtataggtaaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
997084 |
agaaattaagaaaaaattacctaaaatacaatgaagaactttaagcaatggaaatccaccaaaatcaaaagaaaaaccgtcctccacgtataggcaaatt |
997183 |
T |
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| Q |
217 |
t-ggtggtgggttttcattttgaac |
240 |
Q |
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| T |
997184 |
tgggtggtgggttttcattttgaac |
997208 |
T |
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