View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7752_high_4 (Length: 409)
Name: NF7752_high_4
Description: NF7752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7752_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 392
Target Start/End: Original strand, 31041872 - 31042248
Alignment:
| Q |
21 |
gacaatgtcactatggtgaacaccttgaaaaagacagctataaaaaggttctttcaagctttatannnnnnnnn--ctagtgttgagaatggatctacat |
118 |
Q |
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| T |
31041872 |
gacaatgtcactatggtgaacaccttgaaaaagacagctataaaaaggttctttcaagctttatatatttttttttctagagttgagaatggatctacat |
31041971 |
T |
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| Q |
119 |
ttgttaatgatgacaccaaattcattgatgtcactatgaactacaagttgacattccatttctattaacagtaacactagttcctctgatatgtcagtca |
218 |
Q |
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| T |
31041972 |
ttgttaatgatgacaccaaattcattgatgtcactatgaactacaagttgacattccatatctattaacagtaacactagttcctctgatatgtcagtca |
31042071 |
T |
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| Q |
219 |
accattctaatgcttgccataa---tgctatacattcagcttcatgagaaagaagctttccataatgccataatctgagaaaacaatgccagtcatcctc |
315 |
Q |
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| T |
31042072 |
accattctaatgcttgccataataatgctatacattcagcttcatgagaaagaagctttccataatgccataatctgagaaaacaatgccagtcatcctc |
31042171 |
T |
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| Q |
316 |
caccaaaacgtcgcagtactgacagcttgatagtgatgaatctatgagggactataggccaaccaaactttatattt |
392 |
Q |
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| T |
31042172 |
catcaaaacgtcgcagtactgacagcttgatagtgatgaatctatgagggactataggccaaccaaactttatattt |
31042248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 31068640 - 31068767
Alignment:
| Q |
24 |
aatgtcactatggtgaacaccttgaaaaagacagctataaaaaggttctttcaagctttata---nnnnnnnnnctagtgttgagaatggatctacattt |
120 |
Q |
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| T |
31068640 |
aatgtcactatggcgaacaccttgaaaaagacggctataaaaaggttctttcaagctttatatgttttttctttctggtgttaagaatggatctacattt |
31068739 |
T |
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| Q |
121 |
gttaatgatgacaccaaattcattgatg |
148 |
Q |
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| T |
31068740 |
gttaatgacgacaccaaattcattgatg |
31068767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 31068785 - 31068859
Alignment:
| Q |
150 |
cactatgaactacaagttgacattccatttctattaacagtaacactagttcctctgatatgtcagtcaaccattcta |
227 |
Q |
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| T |
31068785 |
cactatgaactacatgttgacattccatttctat--atactaacact-ggtcctctgatatgccagtcgaccattcta |
31068859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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