View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7752_low_10 (Length: 303)
Name: NF7752_low_10
Description: NF7752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7752_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 34975938 - 34975666
Alignment:
| Q |
16 |
agaacaagtatagtaatgttggcatgcttgaaaaccctaggcctattgacttcatgatggaaagtaagttagaaggcataattgggagtagttctaggaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975938 |
agaacaagtatagtaatgttggcatgcttgaaaaccctaggcctattgacttcatgatggaaaataagttagaaggcataattgggagtagttctaggaa |
34975839 |
T |
|
| Q |
116 |
ttttgataattattttggaaatagtgatcatatgaatatgaatatgggtgttgggattggaggagatatgatgaatggacaaaatgggttgccacagaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975838 |
ttttgataattattttggaaatagtgatcatatgaatatgaatatgggtgttgggattggaggagatatgatgaatggacaaaatgggttgccacagaat |
34975739 |
T |
|
| Q |
216 |
tttcatcatgcatttggtggaatgtcatttgaaggaggaaacaatagcaatggtgcttatttaatggattctt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34975738 |
tttcatcatgcatttggtggaatgtcatttgaaggaggaaacaataacaatggtgcttatttaatggattctt |
34975666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University