View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7752_low_14 (Length: 202)
Name: NF7752_low_14
Description: NF7752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7752_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 13148923 - 13149082
Alignment:
| Q |
28 |
cattacattaattacatttattcatgaacttggtctatgattatgcattacttgttcaaggaactaaaccataccttaggggaatttcttaccattactt |
127 |
Q |
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| T |
13148923 |
cattacattaattacatttattcatgaacttggtctatgattatgcattacttgttcaaggaactaaaccataccttaggggaatttcttaccattactt |
13149022 |
T |
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| Q |
128 |
catttggctttaactccttagaaattcctaaaaggtttatctgatttgttccttctttct |
187 |
Q |
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| T |
13149023 |
catttggctttaactccttagaaattcctaaaaggtttatctgatttgttccttctttct |
13149082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 29009993 - 29009853
Alignment:
| Q |
28 |
cattacattaattacatttattcatgaacttggtctatgattatgcattacttgttcaaggaactaaaccataccttaggggaa-tttcttaccattact |
126 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |
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| T |
29009993 |
cattacattgattacatttattcatgaacttggtctatgattatgcattagttgttcaagga--------------taggggaaatttcttaccattact |
29009908 |
T |
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| Q |
127 |
tcatttggctttaactccttagaaattcctaaaaggtttatctgatttgttcctt |
181 |
Q |
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| T |
29009907 |
tcatttggctttaactccttagaaattcctaaaatgtttatctgatttgttcctt |
29009853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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