View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7752_low_3 (Length: 488)
Name: NF7752_low_3
Description: NF7752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7752_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 472
Target Start/End: Original strand, 44008147 - 44008602
Alignment:
| Q |
12 |
acatcatgaggtcaattggctactgacacttgtttttcattcttgttattgtgagacttgttattatttgattaaatatatggacaatattattaggtcg |
111 |
Q |
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| T |
44008147 |
acatcatgaggtcaattggctactgacacttgtttttcattcttgttattgtgagatttgttattatttgattaaaga---gggcgatattattaggtcg |
44008243 |
T |
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| Q |
112 |
gtcctctagagatgtgcaggacactaattttgtagctactatcaattcttcaagtgaatcgacaattcatcccatgaaattgtagggttcgagcatttac |
211 |
Q |
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| T |
44008244 |
gtcctctagagatgtgcaggacactaattttgtagctactatcaattcttcgagtgaatcaacaattcatcccatgaaattgtagggttcgagcatttac |
44008343 |
T |
|
| Q |
212 |
ccctgtaacttgttaacaggnnnnnnnnngaccttgatcttgagttacgtcgagcaacttggtctttctgttaacttgaatctagtttattgtcaaatta |
311 |
Q |
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| T |
44008344 |
ccctgtaacttgttaacagg--aaaaaaagaccttgatcttgagttacgtcgagcaacttggtctttctgttaacttgaatctagtttattgtcaaatta |
44008441 |
T |
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| Q |
312 |
gttgctgaattctatcatttactatcaaattagtctctgaattatataacaggnnnnnnncccttatctttgagttccatcgagcaacttggtctatctg |
411 |
Q |
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| T |
44008442 |
gttgctgaattctatcatttaccatcaaattagtctctgaattatataacaggaaaaaaaaccttatctttgagttccatcgagcaacttggtctatctg |
44008541 |
T |
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| Q |
412 |
ttaacttgtacctaaattattgtcaaattagttgttgaattttatcacttaccaacaagtt |
472 |
Q |
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| T |
44008542 |
ttaacttgtacctaaattattgtcaaattagttgttgaattttatcacttaccaacaagtt |
44008602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 361
Target Start/End: Original strand, 44008511 - 44008621
Alignment:
| Q |
251 |
ttgagttacgtcgagcaacttggtctttctgttaacttgaatctagtttattgtcaaattagttgctgaattctatcatttactatcaaattagtctctg |
350 |
Q |
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| T |
44008511 |
ttgagttccatcgagcaacttggtctatctgttaacttgtacctaaattattgtcaaattagttgttgaattttatcacttaccaacaagttagtctctg |
44008610 |
T |
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| Q |
351 |
aattatataac |
361 |
Q |
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| T |
44008611 |
aattaaataac |
44008621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 41688604 - 41688537
Alignment:
| Q |
245 |
ttgatcttgagttacgtcgagcaacttggtctttctgttaacttgaatctagtttattgtcaaattag |
312 |
Q |
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| T |
41688604 |
ttgattttgaattatgtcgagcaacttggttcttctattaacttgtatctaatttactgtcaaattag |
41688537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 344
Target Start/End: Complemental strand, 24133729 - 24133636
Alignment:
| Q |
251 |
ttgagttacgtcgagcaacttggtctttctgttaacttgaatctagtttattgtcaaattagttgctgaattctatcatttactatcaaattag |
344 |
Q |
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|||| ||||||||||||| |||||| |||| |||||||| ||||| ||| |||||||| ||| ||||| | ||||| ||| || |||||||| |
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| T |
24133729 |
ttgaattacgtcgagcaaattggtccttctattaacttgtatctaattttctgtcaaatcagtccctgaagtatatcacttaatagcaaattag |
24133636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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