View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7752_low_4 (Length: 484)
Name: NF7752_low_4
Description: NF7752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7752_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 33737132 - 33736677
Alignment:
| Q |
18 |
aattggtattagtgttaagactaggaacacttgt---accagagacagcataacttcctacatgatatgattttctgagattctatcacattcttcaagt |
114 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33737132 |
aattggtattagtgttaagactaggaacacttgttgtaccagaga--gcataacttcctacatgatatgattttctgagattctatcacattcttcaagt |
33737035 |
T |
|
| Q |
115 |
ataccaaattttaattcaattggttgttactgataggtcgaggtctagtagaagaccacaaagcagcaactaaaacattatttaatctggacataacact |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33737034 |
ataccaaattttaattcaattggttgttactgataggtcgaggtctagtagaagaccacaaagcagcaactaaaacattatttaatctggacataacact |
33736935 |
T |
|
| Q |
215 |
aaggggagagacaaattcatcaacaaagtgcataactagaactaacaagaaggtcaatgacatatgctactgctaacatcaacattctccccctcttcaa |
314 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33736934 |
aagggaagagacaaattcatcaacaaagtgcataactagaactaacaagaaggtc-atgacatatgctactgctaacatcaacattctccctctcttcaa |
33736836 |
T |
|
| Q |
315 |
gaaccaaaagtttgaaaggaaacaaaatctaataacccctacccctcctaccactcttatgaacagctttaaaatcaaatgtaactgcagtgactaatcc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33736835 |
gaaccaaaagtttgaaaggaaacaaaatctaataacccctacccctcctaccactcttatgaacagctttaaaatcaaatgtaactgcggtgactaatcc |
33736736 |
T |
|
| Q |
415 |
cttcaatataactaagatccatttaagggtttgacatctcccaacaaatgcttcttcat |
473 |
Q |
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| T |
33736735 |
cttcaatataactaagatctatttaagggtttgacatctcccaacaaatgcttcttcat |
33736677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 464
Target Start/End: Original strand, 3119725 - 3119793
Alignment:
| Q |
396 |
taactgcagtgactaatcccttcaatataactaagatccatttaagggtttgacatctcccaacaaatg |
464 |
Q |
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|||||||| ||||||||||| |||| ||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
3119725 |
taactgcactgactaatcccctcaaggtaactaagatccatttaaggggttgacctctttcaacaaatg |
3119793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 33621315 - 33621247
Alignment:
| Q |
51 |
taccagagacagcataacttcctacatgatatgattttctgagattctatcacattcttcaagtatacca |
120 |
Q |
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|||||||||||| | || ||||||||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
33621315 |
taccagagacagtacaatatcctacatgatatgattttttgaga-actatcacattcttcacgtatacca |
33621247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 473
Target Start/End: Complemental strand, 4233135 - 4233059
Alignment:
| Q |
397 |
aactgcagtgactaatcccttcaatataactaagatccatttaagggtttgacatctcccaacaaatgcttcttcat |
473 |
Q |
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|||||||| ||||||||| || | ||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
4233135 |
aactgcagagactaatcctctcgaggtaactaagatccatttaaggggttgacatctcccaaaaaatgcttcttcat |
4233059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 2025407 - 2025360
Alignment:
| Q |
422 |
ataactaagatccatttaagggtttgacatctcccaacaaatgcttct |
469 |
Q |
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|||||| |||| |||||||||| ||||||||||||||||||| ||||| |
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| T |
2025407 |
ataactgagattcatttaaggggttgacatctcccaacaaatacttct |
2025360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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