View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7752_low_5 (Length: 483)
Name: NF7752_low_5
Description: NF7752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7752_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 157 - 421
Target Start/End: Complemental strand, 40830470 - 40830208
Alignment:
| Q |
157 |
atatatctcaactcaagtgtacttcagaatattgactataaccttnnnnnnnnn-tatagggatgactaatagacatatttcattcatgaatgactaaaa |
255 |
Q |
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| T |
40830470 |
atatatctcaactcaagtgtacttcagaatattgactataaccttaaaaaaaaaatatagggatgactaatagacatatgtcattcatgaatgactaaaa |
40830371 |
T |
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| Q |
256 |
gtaagattcgtaacaaagtaaaataggatttgaaatttatgaaccataataacatatatttgcttcaatgttttcgtcagcatgtttcaacttgtaaaga |
355 |
Q |
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| T |
40830370 |
gtaagattcgtaacaaagtaaaataggatttgaaatttatgaaccataataac--atatttgcttcaatattttcgtcagcatgtttcaacttgtaaaga |
40830273 |
T |
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| Q |
356 |
tattgcgataggtaagttttggagttcgaaccctgaattctacacttattcatattaaaaggtgaa |
421 |
Q |
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| T |
40830272 |
tattgcggtaggtaagttttggagttcgaaccctgaattcta-acttattcatattaaagggtgaa |
40830208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 40836042 - 40835898
Alignment:
| Q |
13 |
tagaccaccaccatctcctccttagatttacatatagtattctaggagataaaatgacatttcttcacgtttgatgcagtttctcatataaagtttctac |
112 |
Q |
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| T |
40836042 |
tagaccaccaccatctcctccttagatttacatatagtattctaggagataaaatgacatttcttcacgtttgatgcagtttctcatataaagtttctac |
40835943 |
T |
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| Q |
113 |
aaaggctctccactttatcacaaatagactacattttgttgggta |
157 |
Q |
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| T |
40835942 |
aaaggctctccacttcatcacaaatagactacattttgttgggta |
40835898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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