View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7752_low_9 (Length: 364)

Name: NF7752_low_9
Description: NF7752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7752_low_9
NF7752_low_9
[»] chr3 (18 HSPs)
chr3 (5-348)||(45852955-45853298)
chr3 (23-228)||(40700995-40701200)
chr3 (21-228)||(21748364-21748571)
chr3 (19-202)||(33072607-33072790)
chr3 (229-348)||(34905814-34905933)
chr3 (19-228)||(28457753-28457957)
chr3 (269-348)||(26442957-26443036)
chr3 (254-346)||(2671896-2671988)
chr3 (226-346)||(48897703-48897823)
chr3 (238-305)||(10593524-10593591)
chr3 (226-340)||(1632774-1632887)
chr3 (174-228)||(21495212-21495266)
chr3 (269-340)||(18271992-18272063)
chr3 (21-228)||(46663189-46663395)
chr3 (30-141)||(7818473-7818583)
chr3 (248-348)||(3169269-3169369)
chr3 (237-330)||(40840687-40840780)
chr3 (29-137)||(43463025-43463133)
[»] chr6 (15 HSPs)
chr6 (19-228)||(12255094-12255303)
chr6 (22-228)||(10789392-10789599)
chr6 (20-228)||(29979369-29979573)
chr6 (228-341)||(28867152-28867265)
chr6 (19-227)||(23404470-23404678)
chr6 (32-228)||(9314804-9314999)
chr6 (237-341)||(32871781-32871885)
chr6 (229-348)||(6784723-6784842)
chr6 (226-348)||(34713466-34713588)
chr6 (252-345)||(6519231-6519324)
chr6 (226-348)||(2130513-2130635)
chr6 (19-160)||(32329334-32329474)
chr6 (54-228)||(24660763-24660937)
chr6 (237-305)||(11301812-11301880)
chr6 (177-228)||(391238-391289)
[»] chr1 (21 HSPs)
chr1 (227-348)||(29657330-29657451)
chr1 (19-228)||(37346981-37347190)
chr1 (238-341)||(10061569-10061672)
chr1 (19-228)||(28622882-28623091)
chr1 (228-340)||(23906635-23906747)
chr1 (228-348)||(35412993-35413113)
chr1 (30-228)||(49549508-49549705)
chr1 (254-340)||(43537174-43537260)
chr1 (30-228)||(10306760-10306960)
chr1 (224-340)||(21540037-21540153)
chr1 (254-345)||(11470017-11470108)
chr1 (238-348)||(35149685-35149795)
chr1 (19-205)||(35508827-35509013)
chr1 (229-304)||(49313575-49313650)
chr1 (244-348)||(26469927-26470031)
chr1 (218-305)||(48852600-48852687)
chr1 (242-348)||(47996658-47996764)
chr1 (29-149)||(19909993-19910113)
chr1 (269-321)||(13085089-13085141)
chr1 (238-278)||(35360385-35360425)
chr1 (128-203)||(46239150-46239226)
[»] chr5 (21 HSPs)
chr5 (19-228)||(5868241-5868449)
chr5 (19-228)||(7883744-7883953)
chr5 (19-227)||(29860851-29861059)
chr5 (19-228)||(33007965-33008173)
chr5 (228-345)||(40519146-40519262)
chr5 (227-341)||(25493785-25493899)
chr5 (39-228)||(33134090-33134278)
chr5 (229-348)||(3040281-3040400)
chr5 (30-204)||(31077842-31078015)
chr5 (224-345)||(30735345-30735466)
chr5 (25-213)||(15922169-15922357)
chr5 (224-347)||(30071734-30071857)
chr5 (224-348)||(30700891-30701013)
chr5 (249-340)||(20359899-20359992)
chr5 (128-225)||(8095959-8096056)
chr5 (254-306)||(24402036-24402088)
chr5 (232-298)||(35875810-35875876)
chr5 (225-278)||(21259182-21259235)
chr5 (41-150)||(25347110-25347219)
chr5 (281-346)||(34280129-34280194)
chr5 (19-136)||(42683974-42684091)
[»] chr4 (25 HSPs)
chr4 (30-228)||(34513723-34513921)
chr4 (30-228)||(45499146-45499344)
chr4 (242-345)||(25817646-25817749)
chr4 (30-228)||(3767730-3767928)
chr4 (19-213)||(34940274-34940468)
chr4 (232-348)||(42504215-42504328)
chr4 (46-228)||(17702138-17702320)
chr4 (30-228)||(28115895-28116093)
chr4 (89-228)||(5787270-5787409)
chr4 (228-341)||(24060543-24060656)
chr4 (249-345)||(5288510-5288606)
chr4 (67-223)||(37910637-37910793)
chr4 (237-348)||(19482494-19482605)
chr4 (229-306)||(41545383-41545460)
chr4 (223-306)||(16528525-16528608)
chr4 (269-340)||(29065307-29065378)
chr4 (254-304)||(42108751-42108801)
chr4 (249-340)||(2765397-2765488)
chr4 (226-306)||(37762770-37762852)
chr4 (240-346)||(41485716-41485822)
chr4 (119-228)||(44290137-44290246)
chr4 (165-228)||(11138728-11138791)
chr4 (22-76)||(21342169-21342223)
chr4 (316-348)||(19663341-19663373)
chr4 (241-297)||(33883111-33883167)
[»] chr7 (19 HSPs)
chr7 (26-205)||(34703025-34703204)
chr7 (227-341)||(21882797-21882911)
chr7 (227-346)||(24250477-24250596)
chr7 (227-340)||(8123657-8123770)
chr7 (30-224)||(18503050-18503246)
chr7 (227-348)||(23611771-23611891)
chr7 (227-341)||(46297579-46297693)
chr7 (228-302)||(20125557-20125631)
chr7 (238-348)||(22631457-22631567)
chr7 (90-228)||(31804765-31804903)
chr7 (19-213)||(15672947-15673133)
chr7 (232-348)||(23730526-23730640)
chr7 (269-348)||(46413764-46413846)
chr7 (224-348)||(19511373-19511497)
chr7 (280-341)||(1985025-1985086)
chr7 (186-228)||(6110261-6110303)
chr7 (54-173)||(25102657-25102776)
chr7 (230-317)||(38041501-38041588)
chr7 (241-306)||(44600988-44601053)
[»] chr2 (24 HSPs)
chr2 (224-348)||(13716731-13716855)
chr2 (227-348)||(32976041-32976164)
chr2 (229-348)||(20142936-20143055)
chr2 (30-228)||(40619665-40619863)
chr2 (31-228)||(41595236-41595433)
chr2 (30-213)||(13996137-13996320)
chr2 (23-224)||(13349474-13349675)
chr2 (19-228)||(27338704-27338902)
chr2 (229-348)||(37714391-37714510)
chr2 (238-341)||(38320228-38320331)
chr2 (225-327)||(37899545-37899647)
chr2 (238-347)||(31645119-31645229)
chr2 (227-346)||(19945747-19945866)
chr2 (30-141)||(37485595-37485706)
chr2 (249-323)||(4434285-4434359)
chr2 (255-341)||(27407416-27407502)
chr2 (237-340)||(3167872-3167975)
chr2 (238-341)||(35457378-35457480)
chr2 (269-327)||(27007177-27007235)
chr2 (118-213)||(34355880-34355975)
chr2 (22-80)||(19695492-19695550)
chr2 (119-213)||(19695769-19695863)
chr2 (229-278)||(31845403-31845452)
chr2 (269-341)||(14131164-14131236)
[»] chr8 (23 HSPs)
chr8 (223-346)||(24068140-24068262)
chr8 (19-227)||(37246148-37246355)
chr8 (22-227)||(16295324-16295528)
chr8 (22-227)||(16303026-16303230)
chr8 (21-213)||(15268611-15268802)
chr8 (229-348)||(29414352-29414469)
chr8 (30-201)||(32962050-32962221)
chr8 (72-228)||(40953265-40953421)
chr8 (29-228)||(16456489-16456688)
chr8 (228-340)||(36947254-36947368)
chr8 (229-340)||(5686319-5686437)
chr8 (19-228)||(43596815-43597024)
chr8 (128-228)||(27696321-27696421)
chr8 (228-305)||(29543676-29543753)
chr8 (229-348)||(33543318-33543434)
chr8 (225-340)||(38585117-38585232)
chr8 (229-341)||(5718475-5718595)
chr8 (231-341)||(35393710-35393820)
chr8 (90-202)||(11656342-11656454)
chr8 (19-98)||(11657003-11657082)
chr8 (269-348)||(26415560-26415639)
chr8 (291-348)||(25124400-25124457)
chr8 (19-51)||(42180485-42180517)
[»] scaffold0122 (1 HSPs)
scaffold0122 (225-306)||(18598-18679)
[»] scaffold0018 (1 HSPs)
scaffold0018 (238-348)||(69946-70056)
[»] scaffold0702 (1 HSPs)
scaffold0702 (128-228)||(3943-4043)
[»] scaffold0662 (1 HSPs)
scaffold0662 (128-228)||(4059-4159)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 5 - 348
Target Start/End: Complemental strand, 45853298 - 45852955
Alignment:
Q  5 gtttggtggtcacgagggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattt 104  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45853298 gtttgatggtcaggagggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattt 45853199  T
Q  105 tcttttcctattatgactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  45853198 tcttttcctattatgactttccattgtaatttttatcgtgagtataggctgggttataatctatcttgattggattaaaatatcattccttatttattat 45853099  T
Q  205 cgtgatattatgtcatttttaaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatt 304  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  45853098 cgtgatattctgtcatttttaaaagagcattgttatttatctatagagattttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatt 45852999  T
Q  305 tgcttgaaatcaagggaggtaatgatatgtaattaagaaaaggt 348  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  45852998 tgcttgcaatcaagggagataatgatatgtaattaagaaaaggt 45852955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 40701200 - 40700995
Alignment:
Q  23 agacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgact 122  Q
    |||||| ||||||||||||||| ||||||| |||||||||| | |||| ||| |||||  ||||| |||||||||||||||||  | || |||  |||||    
T  40701200 agacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgctccaaaagtatatgataaaataaaccatttttctgtcatatcctgact 40701101  T
Q  123 ttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcattt 222  Q
    |||| |||||||||||||| |||||||| |||| |||| ||  |||| ||||||||||| || |||||||||||||||| ||| |||||||||| |||||    
T  40701100 ttcctttgtaatttttatcctgagtataagctgtgttagaaattatcctgataggattataagatcattccttatttatcatcttgatattatgacattt 40701001  T
Q  223 ttaaaa 228  Q
    | ||||    
T  40701000 taaaaa 40700995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 21748571 - 21748364
Alignment:
Q  21 ggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatga 120  Q
    |||||||  ||||||||||||||| |||| || |||||||||| | |||| |||||||||   |||| ||||||| |||||||||| | |||||||||||    
T  21748571 ggagacatgatatgatacattaatcatattctgcttaaatctcatgtttgatgcaccaaaatgatatgataaaattaaccattttcctatcctattatga 21748472  T
Q  121 ctttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcat 220  Q
     ||||| ||||||||| |||| | |||||||||||||||| ||  |||| ||||  ||||| || | |||||||||||||||||| ||||||| || |||    
T  21748471 ttttcctttgtaatttctatcctaagtataggctgggttaaaaattatcctgatgagattagaagaccattccttatttattatcttgatattctgccat 21748372  T
Q  221 ttttaaaa 228  Q
    ||||||||    
T  21748371 ttttaaaa 21748364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 33072607 - 33072790
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    ||||||||| |||||||||||||||| |||||||  |||||| || | |||| |||||| |||  |||| |||||||||||||||||| | || |||  |    
T  33072607 agggagacaaaatatgatacattaatcatatcctatttaaatttcatgtttgatgcacctaaggaatatgataaaataaaccattttcctatcatatcct 33072706  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttatt 202  Q
     | ||||| ||||||||| |||| |||||||||||| ||||| ||  |||| ||||||||||| || |||||||||||||||||    
T  33072707 aagtttcctttgtaatttctatcctgagtataggctaggttagaaattatcatgataggattataagatcattccttatttatt 33072790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 348
Target Start/End: Original strand, 34905814 - 34905933
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatg 328  Q
    ||||||| ||||||||||| | |||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||||    ||||||| ||||||||||    
T  34905814 gagcattgctatttatctagatagattttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatg 34905913  T
Q  329 atatgtaattaagaaaaggt 348  Q
    || | |||||||| ||||||    
T  34905914 atgtataattaaggaaaggt 34905933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 28457957 - 28457753
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||  | |||| ||||||||||  |||| |||||||||||||||||  | || |||       
T  28457957 agggagacaggatatgatacattaatcatatcctgcttaaatcttgtgtttgatgcaccaaagtgatatgataaaataaaccatttttctatcttatccc 28457858  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
     ||||||| ||||||||| |||| ||     || |||||||| ||  |||| |||| |||||| || |||||||||||||||||||| ||||||  || |    
T  28457857 aactttcctttgtaatttctatcctg-----agactgggttagaagttatcctgatgggattagaagatcattccttatttattatcttgatatattgcc 28457763  T
Q  219 atttttaaaa 228  Q
    ||||||||||    
T  28457762 atttttaaaa 28457753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 26442957 - 26443036
Alignment:
Q  269 atcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaagaaaaggt 348  Q
    |||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||| | ||||||||| |||||||    
T  26442957 atcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaacaaaaggt 26443036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 346
Target Start/End: Original strand, 2671896 - 2671988
Alignment:
Q  254 ttttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaagaaaag 346  Q
    ||||||||||||||||||||||||| || ||| |||||||||||||||||| |||  ||||||  |||| ||||||| |||||||||| ||||    
T  2671896 ttttatcaagaattgatcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaag 2671988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 226 - 346
Target Start/End: Complemental strand, 48897823 - 48897703
Alignment:
Q  226 aaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggta 325  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||| |||| || ||| | | ||||||||||||||||    ||||||| |||  ||    
T  48897823 aaagagcattgctatttatctagagagattttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaata 48897724  T
Q  326 atgatatgtaattaagaaaag 346  Q
    ||| | |||||||||||||||    
T  48897723 atggtgtgtaattaagaaaag 48897703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 10593591 - 10593524
Alignment:
Q  238 tatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttattt 305  Q
    ||||||| || ||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  10593591 tatttatttagagagattttatcaagaatttatccagaaaatgtctcaaccaattaaatttgttattt 10593524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 1632774 - 1632887
Alignment:
Q  226 aaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggta 325  Q
    ||||||| || ||||||||||| |||  ||||||||| |||| |||||||||| |||||||| |||||||||||||||||    |||||||| |||||||    
T  1632774 aaagagctttgctatttatctagagaatttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggta 1632872  T
Q  326 atgatatgtaattaa 340  Q
    ||| | |||||||||    
T  1632873 atggtgtgtaattaa 1632887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 21495212 - 21495266
Alignment:
Q  174 taggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  21495212 taggattaacatatcattccttatttattatcatgatattctgtcatttttaaaa 21495266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 18272063 - 18271992
Alignment:
Q  269 atcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaa 340  Q
    ||||||||||  ||||||||||||||||||||||||||   |||||||| |||||||||| | |||||||||    
T  18272063 atcaagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaa 18271992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 46663189 - 46663395
Alignment:
Q  21 ggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatga 120  Q
    |||||||  |||||||||||| || ||||| |  ||||||||| |||||| ||||||||| | |||  ||| | ||||| |||||  | ||||||||| |    
T  46663189 ggagacaatatatgatacatttatcatatcatgtttaaatctcatatttgatgcaccaaacagataggatata-taaactatttttatatcctattataa 46663287  T
Q  121 ctttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcat 220  Q
    ||| || || ||||||||||| |||||||| ||| ||||| || ||||  ||| | ||||| ||  ||||||| ||||||||| | |||||| ||  |||    
T  46663288 cttgcctttttaatttttatcctgagtataagctaggttagaaactataatgacatgattataaattcattccatatttattaccatgatataataccat 46663387  T
Q  221 ttttaaaa 228  Q
    ||||||||    
T  46663388 ttttaaaa 46663395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 7818583 - 7818473
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    ||||||||||||||| |||| || |||||||||| | |||| | ||| ||||| ||| ||||||||||| ||||||  | ||||||| | ||||||| ||    
T  7818583 atatgatacattaatcatattctgcttaaatctcatgtttgatacactaaagagatagaataaaataaa-cattttactatcctattctaactttccttt 7818485  T
Q  130 gtaatttttatc 141  Q
    ||||||| ||||    
T  7818484 gtaatttctatc 7818473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 348
Target Start/End: Complemental strand, 3169369 - 3169269
Alignment:
Q  248 tagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaagaaaagg 347  Q
    ||||| ||||||||||||||||||||||||| || | | ||||||||||||  |    ||  ||||||||||| ||||||||  |||||||||| |||||    
T  3169369 tagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaatttcatgaaggccggaaatcaagggcggtaatgaggtgtaattaaggaaagg 3169270  T
Q  348 t 348  Q
    |    
T  3169269 t 3169269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 40840780 - 40840687
Alignment:
Q  237 ctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgat 330  Q
    |||||||| || |||  |||||||||  ||| ||||| |||| || ||||| |||||||||| |||||||   |||||||| ||||||||||||    
T  40840780 ctatttatttagagaatttttatcaaatatttatcaaaaaaatgtttcaactaattaaatttattatttggcggaaatcaaaggaggtaatgat 40840687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 43463133 - 43463025
Alignment:
Q  29 aatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccat 128  Q
    ||||||||| ||| || ||||| |  |||||| || | |||| |||| |||| | |||||||||||||||| |||||||| | ||||  |||||| || |    
T  43463133 aatatgatatatttatcatatcttagttaaatttcatgtttgatgcatcaaaaagatataataaaataaactattttcttattctatggtgacttgcctt 43463034  T
Q  129 tgtaatttt 137  Q
    |||||||||    
T  43463033 tgtaatttt 43463025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 12255094 - 12255303
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| | |||| ||||||||||  ||   |||||||||||||||||| | ||||||| |    
T  12255094 agggagacagaatatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatgggataaaataaaccattttcctatcctattct 12255193  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    | |||||| ||||||||| ||   |||||||||||||||||| ||  |||| |||| |||||| || || ||||||||||||||||| ||||||| ||||    
T  12255194 gtctttcctttgtaatttctaatctgagtataggctgggttaaaaattatcatgatgggattagaagataattccttatttattatcttgatattctgtc 12255293  T
Q  219 atttttaaaa 228  Q
     |||||||||    
T  12255294 ctttttaaaa 12255303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 10789599 - 10789392
Alignment:
Q  22 gagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaa-taaaccattttcttttcctattatga 120  Q
    ||||||||||||||||||||||| |||| || ||||||| || |||||| ||||| | ||| |||  |||||| |||||||||||||| |  |||  |||    
T  10789599 gagacagaatatgatacattaatcatattctgcttaaatttcatatttgatgcacgagagagataagataaaaataaaccattttcttattttatcctga 10789500  T
Q  121 ctttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcat 220  Q
     ||||| ||||||||| ||||  ||||||||| ||||||||||  |||  |||| |||||| ||||||||||||||||||||||| ||||||| ||  ||    
T  10789499 ttttcctttgtaatttctatccagagtataggttgggttataaattattctgatgggattataatatcattccttatttattatcttgatattctgctat 10789400  T
Q  221 ttttaaaa 228  Q
    ||||||||    
T  10789399 ttttaaaa 10789392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 29979573 - 29979369
Alignment:
Q  20 gggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatg 119  Q
    ||||||||||| ||||||||||||| ||||| |  ||||||||| | |||| ||||||||||  |||| |||||||||||||||||| | || |||||||    
T  29979573 gggagacagaa-atgatacattaatcatatcatgtttaaatctcatgtttgatgcaccaaagggatatgataaaataaaccattttcctatcatattatg 29979475  T
Q  120 actttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtca 219  Q
    | ||||| ||||||||| |||| ||||||  |||||||||| ||  |||  |||   |||||||| |||||||||||||||||||| ||||||| |  ||    
T  29979474 attttcctttgtaatttctatcctgagtaccggctgggttagaaattattctga---gattaaaagatcattccttatttattatcttgatattctacca 29979378  T
Q  220 tttttaaaa 228  Q
    |||||||||    
T  29979377 tttttaaaa 29979369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 28867152 - 28867265
Alignment:
Q  228 agagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaat 327  Q
    ||||||||  |||||||||| |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| | |||||||| |||||||||    
T  28867152 agagcattgttatttatctaaagagattttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaat 28867251  T
Q  328 gatatgtaattaag 341  Q
      ||||||||||||    
T  28867252 agtatgtaattaag 28867265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 23404470 - 23404678
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||  ||||||||||||||| ||||||| | ||||| || | |||| ||||||||||| |||  |||||||||||||||| | | || |||  |    
T  23404470 agggagacatgatatgatacattaataatatcctgcataaatttcatgtttgatgcaccaaagagataggataaaataaaccatttccatatcatatcct 23404569  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    |||||||| ||||||||| |||| ||||||||||||  |||| ||  |||| |||| |  |||||| || |||||| |||||||||| ||||||| || |    
T  23404570 gactttcctttgtaatttatatcttgagtataggctaagttagaaattatcctgattgacttaaaagattattcctaatttattatcttgatattctgcc 23404669  T
Q  219 atttttaaa 227  Q
    |||||||||    
T  23404670 atttttaaa 23404678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 9314804 - 9314999
Alignment:
Q  32 atgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccattgt 131  Q
    ||||||||||||| ||||||| |||||||||| | |||| |||||||||   |||  || ||||||||||||||| | ||||||  ||||||||| ||||    
T  9314804 atgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaatggataggat-aaataaaccattttcctatcctatcctgactttcctttgt 9314902  T
Q  132 aatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    |||||  ||| |||||||||||||  ||| ||  |||| || |  ||||| || |||||||||||||||||||| ||||||| || |||||||||||    
T  9314903 aatttcaatcctgagtataggctgaattagaaattatcctggtgagattagaagatcattccttatttattatcttgatattctgccatttttaaaa 9314999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 32871885 - 32871781
Alignment:
Q  237 ctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaa 336  Q
    ||||||||||| |||| |||||||||||||| |||||||||| || ||||||||||||||||||||||||   ||||||||||||||||||  | |||||    
T  32871885 ctatttatctagagagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtgtaa 32871786  T
Q  337 ttaag 341  Q
    |||||    
T  32871785 ttaag 32871781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 348
Target Start/End: Complemental strand, 6784842 - 6784723
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatg 328  Q
    ||||||| ||||||||||| |||| ||||||||| |||| ||||| ||||  ||||| ||||||||||||||||||||   ||||||||||||| |||||    
T  6784842 gagcattgctatttatctagagagtttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatg 6784743  T
Q  329 atatgtaattaagaaaaggt 348  Q
     | |||||||||||||||||    
T  6784742 gtgtgtaattaagaaaaggt 6784723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 348
Target Start/End: Original strand, 34713466 - 34713588
Alignment:
Q  226 aaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggta 325  Q
    |||||||||| ||||||||  | |||| |||||||||||||| |||||||||  |||||||| ||||||||||||||||||    ||||||||||| |||    
T  34713466 aaagagcattgctatttattcagagagtttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgta 34713565  T
Q  326 atgatatgtaattaagaaaaggt 348  Q
    ||| | |||| ||||||||||||    
T  34713566 atggtgtgtatttaagaaaaggt 34713588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 6519231 - 6519324
Alignment:
Q  252 gattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaagaaaa 345  Q
    ||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||   ||||||| ||| |||||||| ||||||||||||||    
T  6519231 gattttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaagaaaa 6519324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 348
Target Start/End: Complemental strand, 2130635 - 2130513
Alignment:
Q  226 aaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggta 325  Q
    ||||||||||  |||||||||| |||| ||| || || |||| ||||||||||| ||||||||||||||||||||||||||   |||||||| ||||||     
T  2130635 aaagagcattgttatttatctagagagttttaataaaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtg 2130536  T
Q  326 atgatatgtaattaagaaaaggt 348  Q
    ||  | |||||||||| ||||||    
T  2130535 attgtgtgtaattaaggaaaggt 2130513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 32329334 - 32329474
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||| |||||||||||||||||||  ||| ||  ||||||| | | |||| ||||||||||  |||| |||||||||||||||||| | || |||  |    
T  32329334 agggaggcagaatatgatacattaatcgtattctgtttaaatcgcatgtttgatgcaccaaagg-atatgataaaataaaccattttcatatcttatcct 32329432  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggtta 160  Q
    |||||||| ||||||||| |||| ||| |||| |||||||||    
T  32329433 gactttcctttgtaatttatatcctgaatatatgctgggtta 32329474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 24660937 - 24660763
Alignment:
Q  54 cttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgacttt-ccattgtaatttttatcgtgagtatagg 152  Q
    |||||||||| |||||| | ||||||||| |||| ||||| |||||||||||  | | ||||  ||  ||| || ||||||||| |||| |||||||| |    
T  24660937 cttaaatctcatatttgatacaccaaagagatatgataaattaaaccatttttctatactatcttggtttttcctttgtaatttgtatcctgagtataag 24660838  T
Q  153 ctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    ||| ||||  | ||||| ||| ||||||| || || || |||||||||||||| ||||||| | ||||||||||||    
T  24660837 ctgagttaggaactatcctgaaaggattagaaaat-ataccttatttattatcatgatattctatcatttttaaaa 24660763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 11301812 - 11301880
Alignment:
Q  237 ctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttattt 305  Q
    |||||||| || |||  ||||||||||||||||||| ||||| ||||||  ||||| ||||||||||||    
T  11301812 ctatttatatagagaatttttatcaagaattgatcatgaaaaggtctcagtcaattgaatttgttattt 11301880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 391289 - 391238
Alignment:
Q  177 gattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    ||||| || |||||||||||||||||||| ||||||| || |||||||||||    
T  391289 gattagaagatcattccttatttattatcttgatattttgccatttttaaaa 391238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 227 - 348
Target Start/End: Original strand, 29657330 - 29657451
Alignment:
Q  227 aagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaa 326  Q
    ||||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||   ||||||| ||||||||    
T  29657330 aagagcattcctatttatctagagagattttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaa 29657429  T
Q  327 tgatatgtaattaagaaaaggt 348  Q
    ||||||||||||||| ||||||    
T  29657430 tgatatgtaattaaggaaaggt 29657451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 37347190 - 37346981
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||||||||||||||||||| ||||| | |||||||||  | |||| ||||||||||  |||| |||||||||||||||||  | ||||||  |    
T  37347190 agggagacagaatatgatacattaatcatatcttgcttaaatcttatgtttgatgcaccaaagggatatgataaaataaaccatttttctatcctatcct 37347091  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    || ||||| ||||||||| |||| |||||||| | ||||||| ||  |||| |||| |||||| || |||||||||||||||||||| ||||||| || |    
T  37347090 gattttcctttgtaatttctatcctgagtatacgatgggttagaaattatcatgatgggattagaagatcattccttatttattatcctgatattctgcc 37346991  T
Q  219 atttttaaaa 228  Q
    ||||| ||||    
T  37346990 attttaaaaa 37346981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 10061569 - 10061672
Alignment:
Q  238 tatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaat 337  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||    
T  10061569 tatttatctagagagtttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaat 10061668  T
Q  338 taag 341  Q
    ||||    
T  10061669 taag 10061672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 28623091 - 28622882
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||  ||||||||||||||| |||||||  ||||||  | | |||| ||||||||||  ||| |||||||||||| |||||  | ||||||  |    
T  28623091 agggagacatgatatgatacattaatcatatcctatttaaattccatgtttgatgcaccaaagggatagaataaaataaactatttttctatcctatcct 28622992  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    |||||||| |||||||||||||| |||||||| |||| |||| ||  |||| ||||  ||||| || |||||||||||||||||||| ||||||| ||      
T  28622991 gactttcctttgtaatttttatcctgagtataagctgtgttagaaattatcctgatgagattagaagatcattccttatttattatcttgatattctgcg 28622892  T
Q  219 atttttaaaa 228  Q
    ||||||||||    
T  28622891 atttttaaaa 28622882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 228 - 340
Target Start/End: Complemental strand, 23906747 - 23906635
Alignment:
Q  228 agagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaat 327  Q
    |||||||| ||||||||||| | || |||||||||||||||||||||||||||| ||| |||||||||||||||||||||   |||||||| ||||||||    
T  23906747 agagcattgctatttatctagaaaggttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaat 23906648  T
Q  328 gatatgtaattaa 340  Q
    | | |||||||||    
T  23906647 ggtgtgtaattaa 23906635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 35412993 - 35413113
Alignment:
Q  228 agagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaat 327  Q
    |||| ||| ||||||||||| |||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||    
T  35412993 agagaattgctatttatctagagagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaat 35413092  T
Q  328 gatatgtaattaagaaaaggt 348  Q
      | |||||||||| ||||||    
T  35413093 agtgtgtaattaaggaaaggt 35413113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 49549508 - 49549705
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    ||||||||||||||| ||||||| |||||||||| |||||| ||||||||||  |||  |||||||||| ||||| | | || |||  ||||||||| ||    
T  49549508 atatgatacattaatcatatcctgcttaaatctcatatttgatgcaccaaagggataggataaaataaatcatttccctatcatatcctgactttccttt 49549607  T
Q  130 gtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    ||||||| |||  |||||||||  ||||||| ||  |||| | || |||||  || |||||||||||||||||||| ||||||| || |||||||||||    
T  49549608 gtaatttatat-atgagtatagattgggttaaaagttatcctaatgggatttgaagatcattccttatttattatcttgatattctgccatttttaaaa 49549705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 340
Target Start/End: Complemental strand, 43537260 - 43537174
Alignment:
Q  254 ttttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaa 340  Q
    |||||||||||||| |||||||||| |||||| |||||||||||||||||||||  ||||||||||||||||||| | |||||||||    
T  43537260 ttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaa 43537174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 10306960 - 10306760
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    |||| ||| |||||| ||||  ||| |||||||| | |||| |||| |||| | | | ||||||||||||||||||| | |  ||| |||| ||||| |     
T  10306960 atataatatattaatcatattattcataaatctcatgtttgatgcatcaaatagagagaataaaataaaccattttcctattatatcatgattttccttc 10306861  T
Q  130 gtaatttttatcgtgagtataggctgggttataacctatcttgataggat--taaaatatcattccttatttattatcgtgatattatgtcatttttaaa 227  Q
    |||||||||||| |||||||| ||||  ||| || ||||| |||||||||  ||||| |||||| ||||||||||||| ||||||| |||||||||||||    
T  10306860 gtaatttttatcttgagtataagctgcattagaaactatcatgataggattataaaagatcatttcttatttattatcatgatattttgtcatttttaaa 10306761  T
Q  228 a 228  Q
    |    
T  10306760 a 10306760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 340
Target Start/End: Original strand, 21540037 - 21540153
Alignment:
Q  224 taaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggagg 323  Q
    |||||||||||| |||||||| || |||| |||||||||||| | |||||||||| |||||| ||||||||||||||||||||   ||||| |||||||     
T  21540037 taaaagagcattgctatttatttagagagtttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggaga 21540136  T
Q  324 taatgatatgtaattaa 340  Q
    ||||||  |||||||||    
T  21540137 taatgaagtgtaattaa 21540153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 11470017 - 11470108
Alignment:
Q  254 ttttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaagaaaa 345  Q
    |||||| ||||||| ||||||||||  ||| ||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  11470017 ttttattaagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaattaagaaaa 11470108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 348
Target Start/End: Complemental strand, 35149795 - 35149685
Alignment:
Q  238 tatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaat 337  Q
    |||||||||| |||| |||||||||||||| ||||||||||  ||| ||||||||||||||||||||||    |||||||||||| ||||||| | ||||    
T  35149795 tatttatctagagagtttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataat 35149696  T
Q  338 taagaaaaggt 348  Q
    |||| ||||||    
T  35149695 taaggaaaggt 35149685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 35509013 - 35508827
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||| |||||||| ||| || ||||  | |||||||||| | |||| | ||| ||| | |||  |||||||||||||||||||| ||||||||     
T  35509013 agggagacagtatatgatatatttatcatattatacttaaatctcatgtttgatccactaaatagataggataaaataaaccattttcttatcctattac 35508914  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatc 205  Q
    ||||| || |||||||||||||| || |||| |  || |||| || ||||||||||| ||||||||  ||||  |||||||||||||    
T  35508913 gacttgcctttgtaatttttatcctgggtatggattgagttacaaactatcttgataagattaaaaattcatctcttatttattatc 35508827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 49313575 - 49313650
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatt 304  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  49313575 gagcattgctatttatccatagagtttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttatt 49313650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 26469927 - 26470031
Alignment:
Q  244 tctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaagaa 343  Q
    |||| |||| |||||||||||||| |||||||||| |||||||| |||||||||| ||||||  |  ||||||| | || ||||| | |||||||||| |    
T  26469927 tctagagagtttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaagga 26470026  T
Q  344 aaggt 348  Q
    |||||    
T  26470027 aaggt 26470031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 48852600 - 48852687
Alignment:
Q  218 catttttaaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttattt 305  Q
    |||||| |||||||||||  |||||||||| |||| |||||| ||||||| ||||| |||| || | || ||||||||||||||||||    
T  48852600 cattttaaaaagagcattgttatttatctagagagtttttattaagaatttatcaaaaaaatgttttaatcaattaaatttgttattt 48852687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 348
Target Start/End: Original strand, 47996658 - 47996764
Alignment:
Q  242 tatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaag 341  Q
    |||||| |||| |||||||   |||||||| | |||| || |||  ||||||||||| ||||| ||| ||||| |||||||||||| | |||||||||||    
T  47996658 tatctagagagtttttatccgaaattgatccaaaaaatgtttcagtcaattaaatttcttattggctggaaattaagggaggtaatcaaatgtaattaag 47996757  T
Q  342 aaaaggt 348  Q
    |||||||    
T  47996758 aaaaggt 47996764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 19909993 - 19910113
Alignment:
Q  29 aatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccat 128  Q
    |||||||||||||||||||||  | ||||||| || | |||| |||| |||||| |||  |||||||||||||||||  | || |||  ||||||||| |    
T  19909993 aatatgatacattaattatattgtgcttaaatatcatgtttgatgcatcaaagagataagataaaataaaccatttttctatcgtatactgactttcctt 19910092  T
Q  129 tgtaatttttatcgtgagtat 149  Q
    | ||||| ||||| |||||||    
T  19910093 tataattgttatcctgagtat 19910113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 13085141 - 13085089
Alignment:
Q  269 atcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaaggga 321  Q
    ||||||||||  |||||  ||||||||||||||||||||  ||||||||||||    
T  13085141 atcaagaaaatatctcagtcaattaaatttgttatttgccggaaatcaaggga 13085089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 35360385 - 35360425
Alignment:
Q  238 tatttatctatagagattttatcaagaattgatcaagaaaa 278  Q
    ||||||| || |||||||||||||| |||||||||||||||    
T  35360385 tatttatttagagagattttatcaataattgatcaagaaaa 35360425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 46239150 - 46239226
Alignment:
Q  128 ttgtaatttttatc-gtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttatta 203  Q
    |||||||||||||  |||||||||||||| |||||||  ||| |||| | |||||| |  |||||||||||||||||    
T  46239150 ttgtaatttttatatgtgagtataggctgtgttataaattattttgacatgattaagaattcattccttatttatta 46239226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 5868449 - 5868241
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||  |||||||| |||||| | ||||| |||||||||| | |||| ||||||||||| |||  |||||||||||||||||| | ||||||       
T  5868449 agggagacaagatatgatatattaatcacatcctacttaaatctcatgtttgatgcaccaaagagataggataaaataaaccattttcctatcctatccc 5868350  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    |||||||| ||||||||| |||| ||||||| |||||||||| || ||||| |||| || ||| || ||||||| |||||||||||||||||||| || |    
T  5868349 gactttcctttgtaatttctatcttgagtattggctgggttagaaactatcctgat-gggttagaagatcattcgttatttattatcgtgatattctgcc 5868251  T
Q  219 atttttaaaa 228  Q
    ||||||||||    
T  5868250 atttttaaaa 5868241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 7883953 - 7883744
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||  | |||| |||| |||||  |||  |||||||||||||||||| | ||||||| |    
T  7883953 agggagacaggatatgatacattaatcatatcctgcttaaatcttatgtttgatgcatcaaagggataggataaaataaaccattttcctatcctattct 7883854  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    || ||||| ||||||||| |||  |||||||||||||| ||| ||  |||| |||| |||||| || |||||||||||||||||||| | ||||| || |    
T  7883853 gaatttcctttgtaatttctattctgagtataggctggattagaaattatcctgatgggattagaagatcattccttatttattatctttatattctgcc 7883754  T
Q  219 atttttaaaa 228  Q
    ||||||||||    
T  7883753 atttttaaaa 7883744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 29860851 - 29861059
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||  ||||||||||||||| |||| || ||||||| || | |||| ||||||||||| |||  |||||||||||||||| | | || ||| ||    
T  29860851 agggagacatgatatgatacattaatcatattctgcttaaatttcatgtttgatgcaccaaagagataggataaaataaaccatttccctatcatatcat 29860950  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    |||||||| ||||||||| |||| ||||||||||||  |||| ||  |||| |||| |||||| || |||||||||||||||||||| ||||||| || |    
T  29860951 gactttcctttgtaatttatatcctgagtataggctaagttagaaattatcctgatgggattagaagatcattccttatttattatcttgatattctgcc 29861050  T
Q  219 atttttaaa 227  Q
    |||||||||    
T  29861051 atttttaaa 29861059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 33008173 - 33007965
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||| ||||||||||||||||||||||| ||||||| ||   |||| |  |||||||  |||  |||||||||| |||||||| | | |||  |    
T  33008173 agggagacaggatatgatacattaattatatcctgcttaaatatcacgtttgatagaccaaagggataggataaaataaatcattttctat-catatcct 33008075  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    |||||||| |||||||||||||| |||||||| ||||||||| ||  |||| |||| |||||| || |||||||||||||||||||| ||||||| ||||    
T  33008074 gactttcctttgtaatttttatcctgagtataagctgggttagaaattatcctgatgggattagaagatcattccttatttattatcttgatattctgtc 33007975  T
Q  219 atttttaaaa 228  Q
    ||| ||||||    
T  33007974 attattaaaa 33007965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 40519146 - 40519262
Alignment:
Q  228 agagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaat 327  Q
    |||||||| ||||||||||| |||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||    
T  40519146 agagcattgctatttatctagagagtttttatcaagaatttattaagaataagtctcaaccaattaaatttgttatttgatggaaatc-agggaggtaat 40519244  T
Q  328 gatatgtaattaagaaaa 345  Q
    ||| ||||||||||||||    
T  40519245 gatgtgtaattaagaaaa 40519262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 25493785 - 25493899
Alignment:
Q  227 aagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaa 326  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||   |||||||| ||||||||    
T  25493785 aagagcattgctatttatctagagagtttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaa 25493884  T
Q  327 tgatatgtaattaag 341  Q
    || | ||||||||||    
T  25493885 tggtgtgtaattaag 25493899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 33134090 - 33134278
Alignment:
Q  39 attaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccattgtaattttt 138  Q
    |||||| ||||||| |||||||||  | |||  ||||||||||  |||  |||||||||||||||||| | ||||||  ||||||||| ||||||||| |    
T  33134090 attaatcatatcctgcttaaatcttatgtttaatgcaccaaagggataggataaaataaaccattttcctatcctatcctgactttcctttgtaatttct 33134189  T
Q  139 atcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    ||| |||||||||||| ||||| ||  |||| | || | |||| || |||||||||||||||||||| ||||||| ||||||||||||||    
T  33134190 atcatgagtataggctaggttagaaattatcct-atggaattagaagatcattccttatttattatcttgatattctgtcatttttaaaa 33134278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 348
Target Start/End: Complemental strand, 3040400 - 3040281
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatg 328  Q
    |||||||  |||||| ||| |||| |||||||||||||| |||||||||| ||||||| |||||||||||||||| || |  ||||||||||||||||||    
T  3040400 gagcattgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatg 3040301  T
Q  329 atatgtaattaagaaaaggt 348  Q
     | |||||||||| ||||||    
T  3040300 gtgtgtaattaaggaaaggt 3040281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 31077842 - 31078015
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    ||||||||||||||| |||| || |||||||||  | |||| ||||||||||   ||  ||||||||||| |||||||| | |||| |||||||||| ||    
T  31077842 atatgatacattaatcatattctacttaaatctaatgtttgatgcaccaaagggttaggataaaataaactattttcttattctatcatgactttccttt 31077941  T
Q  130 gtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattat 204  Q
    ||||||| |||| |||||||| |||| |||| ||  |||| |||| |||||| || |||||||||||||||||||    
T  31077942 gtaatttatatcctgagtataagctgagttagaaattatcctgat-ggattagaagatcattccttatttattat 31078015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 224 - 345
Target Start/End: Complemental strand, 30735466 - 30735345
Alignment:
Q  224 taaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggagg 323  Q
    |||| ||||||| ||||||||||| | || |||||| ||||||  |||||||||| ||||||| |||||||||||||||||||   ||||||||||||||    
T  30735466 taaatgagcattgctatttatctagatagtttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggagg 30735367  T
Q  324 taatgatatgtaattaagaaaa 345  Q
    ||||| |  |||||||||||||    
T  30735366 taatgctgggtaattaagaaaa 30735345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 15922357 - 15922169
Alignment:
Q  25 acagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgacttt 124  Q
    |||| ||||||||||||||| ||||| | |||||||||| | |||| |||| |||||  |||| ||||||||||  |||||  | || ||| ||||||||    
T  15922357 acaggatatgatacattaatcatatcttgcttaaatctcatgtttgatgcatcaaagtgatatgataaaataaattatttttctatcatatcatgacttt 15922258  T
Q  125 ccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatatt 213  Q
    || ||||||||| |||  ||||||| || ||||||| ||  |||| |||| |||||| || |||| |||||||| |||||| |||||||    
T  15922257 cctttgtaatttctattttgagtatcggttgggttagaaattatcctgatgggattagaagatcaatccttattaattatcttgatatt 15922169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 347
Target Start/End: Original strand, 30071734 - 30071857
Alignment:
Q  224 taaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggagg 323  Q
    |||| ||||||| ||||||||||| |||| ||||||| |||||| | |||||||| ||||||||||||||||||| ||||||| | ||||||| || |||    
T  30071734 taaatgagcattgctatttatctaaagagtttttatctagaatttaacaagaaaaggtctcaaccaattaaatttattatttgttggaaatcatggaagg 30071833  T
Q  324 taatgatatgtaattaagaaaagg 347  Q
    || || | ||||||| || |||||    
T  30071834 tagtggtgtgtaattgaggaaagg 30071857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 348
Target Start/End: Complemental strand, 30701013 - 30700891
Alignment:
Q  224 taaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggagg 323  Q
    |||| ||||||| |||||||||||  ||| ||||||||| |||  || ||||||| ||||||| |||||||||||||||||||    |||| ||||||||    
T  30701013 taaatgagcatttctatttatcta--gagtttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggagg 30700916  T
Q  324 taatgatatgtaattaagaaaaggt 348  Q
    ||||| | |||||||||||||||||    
T  30700915 taatgttgtgtaattaagaaaaggt 30700891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 20359899 - 20359992
Alignment:
Q  249 agagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgtt--atttgcttgaaatcaagggaggtaatgatatgtaattaa 340  Q
    |||||||||||||||||||||||||||||| |||||   ||||||||| ||||  |||| | ||||||||| |||| ||||| | |||||||||    
T  20359899 agagattttatcaagaattgatcaagaaaatgtctcggtcaattaaatctgttaaattttcctgaaatcaaaggagataatggtgtgtaattaa 20359992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 8095959 - 8096056
Alignment:
Q  128 ttgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcattttta 225  Q
    |||||||||||||| ||| |||| | || |||| || ||||||||||| ||||||||  ||||||  ||||||||||| | |||||||||| ||||||    
T  8095959 ttgtaatttttatcctgaatatatgttgagttagaaactatcttgataagattaaaaattcattctatatttattatcatcatattatgtcgttttta 8096056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 24402036 - 24402088
Alignment:
Q  254 ttttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttg 306  Q
    |||||||||||||| ||||||||||  |||||||||| |||||||||||||||    
T  24402036 ttttatcaagaatttatcaagaaaagatctcaaccaaataaatttgttatttg 24402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 35875876 - 35875810
Alignment:
Q  232 cattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaattt 298  Q
    |||| |||||||| || |||||||||||||||||||||||||| ||| || | | ||||||||||||    
T  35875876 cattgctatttatttagagagattttatcaagaattgatcaaggaaaggtttaagccaattaaattt 35875810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 21259182 - 21259235
Alignment:
Q  225 aaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaa 278  Q
    |||||||||||  |||||||||| |||| ||||||||||||||||| |||||||    
T  21259182 aaaagagcatttatatttatctagagagtttttatcaagaattgataaagaaaa 21259235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 25347219 - 25347110
Alignment:
Q  41 taattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccattgtaatttttat 140  Q
    |||| ||||||| |||||||||| | |||| ||||||||||  |||  |||||||||||||||||| | || |||  ||| ||||| ||||||||| |||    
T  25347219 taatcatatcctccttaaatctcatgtttgatgcaccaaagggataggataaaataaaccattttcctatcatatcctgattttcctttgtaatttctat 25347120  T
Q  141 cgtgagtata 150  Q
    | | ||||||    
T  25347119 cattagtata 25347110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 34280194 - 34280129
Alignment:
Q  281 tctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaagaaaag 346  Q
    |||||| |||||||||||||||||||   ||||| |||| || ||||| |||||||||||| ||||    
T  34280194 tctcaatcaattaaatttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaag 34280129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 42684091 - 42683974
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||  ||||||||||||||| ||||||| |||||||||| | |||   ||| |||||  |||  |||||||||| ||||||  | || |||  |    
T  42684091 agggagacatgatatgatacattaatcatatcctgcttaaatctcatgtttcaagcatcaaagggataagataaaataaatcatttttctatcatatcct 42683992  T
Q  119 gactttccattgtaattt 136  Q
    |||||||| |||||||||    
T  42683991 gactttcctttgtaattt 42683974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 34513921 - 34513723
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    ||||||||||||||||||||||| |||||||||| | |||| |||||||||   |||  |||||||||||||||||  | || |||  ||||||||| ||    
T  34513921 atatgatacattaattatatcctgcttaaatctcatgtttgatgcaccaaatggataggataaaataaaccatttttctatcatatcctgactttccttt 34513822  T
Q  130 gtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    ||||||| |||| |||||||| ||||||||| ||  |||| |||| |||||| || |||||| ||||||||||||| ||||||| || |||||||||||    
T  34513821 gtaatttctatcctgagtataagctgggttagaaattatcctgatgggattagaaaatcatttcttatttattatcttgatattctgccatttttaaaa 34513723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 45499344 - 45499146
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    |||||||| |||||| |||| ||||||||||| | | |||| |||||||||   |||  ||||||||||||||||   | ||||||  ||||||||| ||    
T  45499344 atatgatatattaatcatattcttcttaaatcacatgtttgatgcaccaaaatgataggataaaataaaccatttctctatcctatcctgactttccttt 45499245  T
Q  130 gtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    ||||||| |||| ||| |||||||||||||| || ||||| |||| |||||| || ||||||| |||||||||||| ||||||| || |||||| ||||    
T  45499244 gtaatttatatcctgaatataggctgggttagaaactatcatgatgggattagaagatcattctttatttattatcttgatattctgccattttgaaaa 45499146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 242 - 345
Target Start/End: Original strand, 25817646 - 25817749
Alignment:
Q  242 tatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaag 341  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||   ||||||||| ||||||||| | ||||||||||    
T  25817646 tatctagagacattttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaattaag 25817745  T
Q  342 aaaa 345  Q
    ||||    
T  25817746 aaaa 25817749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 3767730 - 3767928
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    ||||||||||||||| ||||||| ||||||| || | |||| ||||||||||  |||  |||||||||| |||||   | || |||| ||||||||| ||    
T  3767730 atatgatacattaatcatatcctgcttaaatttcatgtttgatgcaccaaagtgataggataaaataaatcatttctctatcttattttgactttccttt 3767829  T
Q  130 gtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    || |||| |||| | |||||| |||| |||||||  ||||  |||  ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  3767830 gtcatttatatcataagtataagctgagttataaattatccagatgagattagaatatcattccttatttattatcttgatattctgttatttttaaaa 3767928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 34940274 - 34940468
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    ||||||||||||||| |||||||||| || | ||  ||||||||| | |||| |||||||||   |||  |||||||||||||||||| | ||||||  |    
T  34940274 agggagacagaatataatacattaatcatgttctctttaaatctcatgtttgatgcaccaaaaggataggataaaataaaccattttcatatcctatcct 34940373  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatatt 213  Q
    |||||||| ||||||||| |||| |||||||| ||||  ||||||  |||| |||| |||||| || |||| | ||||||||||||| |||||||    
T  34940374 gactttcctttgtaatttctatcctgagtatatgctgatttataaattatcctgatgggattagaaaatcaattcttatttattatcttgatatt 34940468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 348
Target Start/End: Complemental strand, 42504328 - 42504215
Alignment:
Q  232 cattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgata 331  Q
    |||| ||||||||||| |||| ||||||   ||||||||||||||||  | |||||||||||||||||||||||||  |||||||||||||||||||||     
T  42504328 cattgctatttatctagagagtttttat---gaattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatg 42504232  T
Q  332 tgtaattaagaaaaggt 348  Q
    |||||||||| ||||||    
T  42504231 tgtaattaaggaaaggt 42504215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 17702138 - 17702320
Alignment:
Q  46 atatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccattgtaatttttatcgtga 145  Q
    ||||| |||||||||||| | |||| ||||||||||| |||  |||||||||||  ||||||| ||||||  || |||||| |||||||||||||| |||    
T  17702138 atatctttcttaaatctcatgtttgatgcaccaaagagataagataaaataaactgttttcttatcctatcttgtctttcctttgtaatttttatcctga 17702237  T
Q  146 gtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    |||||   || |||| || ||||| |||||| |||| || || ||| ||||||||||||| ||||||| |  |||||||||||    
T  17702238 gtataaattgagttagaaactatcctgatagaattagaagataatttcttatttattatcatgatattcttccatttttaaaa 17702320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 28116093 - 28115895
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    ||||||||||||||| ||||  | |||||||||| |||||| |||||| |||  |||  |||||||||||||||||| | ||||||  | ||||||| ||    
T  28116093 atatgatacattaatcatattatgcttaaatctcatatttgatgcacctaagtgataagataaaataaaccattttcctatcctatcctaactttccttt 28115994  T
Q  130 gtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    ||||||| |||| |||||||| | || |||| ||  |||| |||| | |||| || ||||||| |||||||||||| ||| ||| || |||||||||||    
T  28115993 gtaatttctatcctgagtataagttgtgttagaaattatcctgatggaattagaagatcattctttatttattatcttgagattttgccatttttaaaa 28115895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 5787409 - 5787270
Alignment:
Q  89 ataaaataaaccattttcttttcctattatgactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatc 188  Q
    |||||||||| ||||||| | |||||| |||| ||||| ||||||||| |||   ||||||| |||| |||| ||  |||| |||| ||||||||| |||    
T  5787409 ataaaataaatcattttcctatcctatcatgattttcctttgtaatttctatgtcgagtatatgctgagttagaaattatcctgatgggattaaaagatc 5787310  T
Q  189 attccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    ||||||||||||||||| ||||||| || |||||||||||    
T  5787309 attccttatttattatcttgatattctgccatttttaaaa 5787270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 24060543 - 24060656
Alignment:
Q  228 agagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaat 327  Q
    ||||||||  |||||||||| |||  ||||||||||||||||||||||||| |||| | | |||||||||||||||| | | ||||||||||||| ||||    
T  24060543 agagcattgttatttatctaaagaatttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataat 24060642  T
Q  328 gatatgtaattaag 341  Q
    | | ||||||||||    
T  24060643 ggtgtgtaattaag 24060656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 249 - 345
Target Start/End: Original strand, 5288510 - 5288606
Alignment:
Q  249 agagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaagaaaa 345  Q
    ||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||||||   |||||||||||| ||||| | ||||||||| ||||    
T  5288510 agagattttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaaaaaaa 5288606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 223
Target Start/End: Complemental strand, 37910793 - 37910637
Alignment:
Q  67 tttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccattgtaatttttatcgtgagtataggctgggttataacct 166  Q
    |||| ||||||||||  |||  |||||||||| ||||||| | || |||  ||||||||  ||||||||| |||| |||||||| ||||||||| ||  |    
T  37910793 tttgatgcaccaaagggatacgataaaataaatcattttcctatcatatcctgactttcgtttgtaatttatatcatgagtataagctgggttagaaatt 37910694  T
Q  167 atcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttt 223  Q
    ||| |||| |||||| || |||||||||||||||||||  ||||||| || ||||||    
T  37910693 atcctgatgggattagaagatcattccttatttattattttgatattctgccatttt 37910637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 19482494 - 19482605
Alignment:
Q  237 ctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaa 336  Q
    ||||||||||| |||| |||  | ||||||| ||||||||||  | ||||||||||||||||||||||||   |||||||||||| |||||| | |||||    
T  19482494 ctatttatctagagagttttatttaagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgtgtaa 19482593  T
Q  337 ttaagaaaaggt 348  Q
    ||||| ||||||    
T  19482594 ttaaggaaaggt 19482605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 41545383 - 41545460
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttg 306  Q
    ||||||| ||||||||||| |||| ||  |||||||||| |||||||||| | |||||||||||||||||||||||||    
T  41545383 gagcattactatttatctagagagtttccatcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatttg 41545460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 16528525 - 16528608
Alignment:
Q  223 ttaaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttg 306  Q
    |||| |||| ||| ||||||||||| |||||||||||  |||||||||||| | || |||||| ||||||||||||||||||||    
T  16528525 ttaatagagtattgctatttatctagagagattttatttagaattgatcaatagaaggtctcagccaattaaatttgttatttg 16528608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 29065378 - 29065307
Alignment:
Q  269 atcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaa 340  Q
    |||||||||||||||||| |||||||||||||||||||   |||||||| |||||||||| | |||||||||    
T  29065378 atcaagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaa 29065307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 42108801 - 42108751
Alignment:
Q  254 ttttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatt 304  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  42108801 ttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatt 42108751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 2765488 - 2765397
Alignment:
Q  249 agagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaa 340  Q
    |||| |||||| |||| ||||||||||||| |||| | |||||||||||||||||| ||   |||||| ||||| ||||||| |||||||||    
T  2765488 agagtttttattaagagttgatcaagaaaaggtctaagccaattaaatttgttattggccaaaaatcatgggagataatgatgtgtaattaa 2765397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 37762770 - 37762852
Alignment:
Q  226 aaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaag--tctcaaccaattaaatttgttatttg 306  Q
    |||||||||| ||||||||||| |||| ||| |||||||||| |||||||||| |   | |||||||||||||||||||||||    
T  37762770 aaagagcattgctatttatctaaagagttttcatcaagaatttatcaagaaaatgccacacaaccaattaaatttgttatttg 37762852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 346
Target Start/End: Original strand, 41485716 - 41485822
Alignment:
Q  240 tttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaatta 339  Q
    |||||||| |||| ||||||||||||||||||||||||| || | | ||||||||||||  |  | ||  ||||| |||||||||||||   ||||||||    
T  41485716 tttatctagagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattttctgctggcaggaaattaagggaggtaatggggtgtaatta 41485815  T
Q  340 agaaaag 346  Q
    |||||||    
T  41485816 agaaaag 41485822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 44290246 - 44290137
Alignment:
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    |||||||| ||||||||| |||| ||||||||||||| |||| ||  |||| | ||  ||||| || ||||||  |||||||||||| ||||||| || |    
T  44290246 gactttcctttgtaatttatatcctgagtataggctgagttagaagttatcctaatgagattagaagatcattaattatttattatcttgatattctgcc 44290147  T
Q  219 atttttaaaa 228  Q
    ||||||||||    
T  44290146 atttttaaaa 44290137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 11138728 - 11138791
Alignment:
Q  165 ctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    |||||||||||||||||| |  ||||| ||| ||||||||| ||||||| | ||||||||||||    
T  11138728 ctatcttgataggattaacaattcatttcttgtttattatcatgatattctttcatttttaaaa 11138791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 21342223 - 21342169
Alignment:
Q  22 gagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcac 76  Q
    ||||||| ||||||||||||||| ||||||| |||||||||| | |||| |||||    
T  21342223 gagacaggatatgatacattaatcatatcctgcttaaatctcatgtttgatgcac 21342169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 19663341 - 19663373
Alignment:
Q  316 aagggaggtaatgatatgtaattaagaaaaggt 348  Q
    ||||||||||||||| |||||||||||||||||    
T  19663341 aagggaggtaatgatgtgtaattaagaaaaggt 19663373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 33883111 - 33883167
Alignment:
Q  241 ttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatt 297  Q
    ||||||| | || ||||||||||||||||||||||||| || | | |||||||||||    
T  33883111 ttatctaaaaagtttttatcaagaattgatcaagaaaatgtttaagccaattaaatt 33883167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 34703025 - 34703204
Alignment:
Q  26 cagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttc 125  Q
    ||||||||||||||||||| ||||||| |||||||| | | |||| |||||||||  ||||| ||||||||||| |||||| | || |||  ||||||||    
T  34703025 cagaatatgatacattaatcatatcctgcttaaatcacatgtttgatgcaccaaaagtatatgataaaataaactattttcctatcatatcctgactttc 34703124  T
Q  126 cattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatc 205  Q
    | ||||||||| |||| |||| ||||| ||||||| || ||||| |||| |||||| || ||||||||||||||||||||    
T  34703125 ctttgtaatttatatcatgaggataggttgggttagaaactatcctgatgggattagaagatcattccttatttattatc 34703204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 21882911 - 21882797
Alignment:
Q  227 aagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaa 326  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||| |||||||  ||||| |||||||||||||||||||||  |||||||||||||||||    
T  21882911 aagagcattgctatttatctagagagattttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaa 21882812  T
Q  327 tgatatgtaattaag 341  Q
    || | ||||||||||    
T  21882811 tggtgtgtaattaag 21882797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 346
Target Start/End: Complemental strand, 24250596 - 24250477
Alignment:
Q  227 aagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaa 326  Q
    ||||||||| |||| |||||| ||||||||||||||||||||||||||||||  ||| | |||||| |||||||||||||   |||||||||||||||||    
T  24250596 aagagcattgctatctatctaaagagattttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaa 24250497  T
Q  327 tgatatgtaattaagaaaag 346  Q
    || | |||||||||||||||    
T  24250496 tggtttgtaattaagaaaag 24250477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 340
Target Start/End: Original strand, 8123657 - 8123770
Alignment:
Q  227 aagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaa 326  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||| | ||||| || |||| |||    
T  8123657 aagagcattgctatttatctagagagattttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatttgttggaaattaatggagataa 8123756  T
Q  327 tgatatgtaattaa 340  Q
    | || | |||||||    
T  8123757 taatgtataattaa 8123770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 18503246 - 18503050
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    ||||||||||||||| ||||||| ||||||| || | |||| ||||||||||| |||  |||||||||||||||||| | ||||||  ||| ||||  ||    
T  18503246 atatgatacattaatcatatcctgcttaaatatcatgtttgatgcaccaaagagataggataaaataaaccattttcctatcctatcctgattttcattt 18503147  T
Q  130 gtaatttttatcgtgag--tataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcattttt 224  Q
    ||||||| |||| ||||  ||||||||| |||| ||  |||  |||| |||||| || ||||||| ||||| |||||| ||||||| || |||||||    
T  18503146 gtaatttctatcttgagtatataggctgtgttagaaattatgctgatgggattagaagatcattctttattaattatcttgatattctgccattttt 18503050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 348
Target Start/End: Complemental strand, 23611891 - 23611771
Alignment:
Q  227 aagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaa 326  Q
    ||||| ||| ||||||||||| |||| |||||| ||||||| |||||||||| |||||||| ||||||||||||||||||   ||||||||| |||||||    
T  23611891 aagagaattactatttatctagagagtttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaagagaggtaa 23611792  T
Q  327 tgatatgtaattaagaaaaggt 348  Q
    ||  ||||||||||| ||||||    
T  23611791 tg-gatgtaattaagtaaaggt 23611771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 46297579 - 46297693
Alignment:
Q  227 aagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaa 326  Q
    ||||||||| ||||||||||| |||| |||||||||||||| |||||||||| |||||| ||| || |||||||||||||    |||||||||||| |||    
T  46297579 aagagcattactatttatctagagagtttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaa 46297678  T
Q  327 tgatatgtaattaag 341  Q
    || | ||||||||||    
T  46297679 tggtgtgtaattaag 46297693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 20125557 - 20125631
Alignment:
Q  228 agagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgtta 302  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||||||||| || ||| ||||||||||||||||    
T  20125557 agagcatttctatttatctagagaggttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgtta 20125631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 348
Target Start/End: Original strand, 22631457 - 22631567
Alignment:
Q  238 tatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaat 337  Q
    |||||||||| ||| ||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||   |||||||| |||| ||||  | ||||||    
T  22631457 tatttatctaaagatattttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaat 22631556  T
Q  338 taagaaaaggt 348  Q
    |||| ||||||    
T  22631557 taaggaaaggt 22631567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 31804903 - 31804765
Alignment:
Q  90 taaaataaaccattttcttttcctattatgactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatca 189  Q
    ||||||||||||||||||| ||||||  ||| ||  | || ||||||||||| ||||||||  ||| |||| || ||||  ||| | ||||| ||  |||    
T  31804903 taaaataaaccattttcttatcctatcctgaattgtctttataatttttatcttgagtataaactgcgttaaaatctattatgacatgattagaaattca 31804804  T
Q  190 ttccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  31804803 ttccttatttattatcctgatattatgtcatttttaaaa 31804765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 15673133 - 15672947
Alignment:
Q  19 agggagacagaatatgatacattaat--tatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctatt 116  Q
    |||||| ||| |||||||||||||||  |||||||| |||||||||| | |||| ||||||||||| |||  |||||||||||||||||| | || |||     
T  15673133 agggaggcaggatatgatacattaatcatatatcctgcttaaatctcatgtttgatgcaccaaagagataggataaaataaaccattttcctatcatatc 15673034  T
Q  117 atgactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatatt 213  Q
     ||||||||| ||| ||||| ||       |||||||||||||| ||  |||| |||   ||||| || |||||||||||||||||||| |||||||    
T  15673033 ctgactttcctttgcaatttata-------tataggctgggttagaaattatcctga---gattagaagatcattccttatttattatcttgatatt 15672947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 348
Target Start/End: Complemental strand, 23730640 - 23730526
Alignment:
Q  232 cattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgata 331  Q
    |||| ||||||||| | |||||||||||||||||||||||||||||| || ||| | ||||||||| ||||||||   ||||||||| |||||||||       
T  23730640 cattgctatttatcgagagagattttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaatg--g 23730543  T
Q  332 tgtaattaagaaaaggt 348  Q
    |||||||||| ||||||    
T  23730542 tgtaattaaggaaaggt 23730526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 46413846 - 46413764
Alignment:
Q  269 atcaagaaaaagtctcaaccaattaaatttgttatttgct---tgaaatcaagggaggtaatgatatgtaattaagaaaaggt 348  Q
    |||||||||| ||||||||||||||||||||||||||| |    ||||||||||||||||||||| |||||||||| ||||||    
T  46413846 atcaagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggt 46413764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 348
Target Start/End: Original strand, 19511373 - 19511497
Alignment:
Q  224 taaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggagg 323  Q
    |||||||| |||  |||||||||  |||||||||||||||||||||| |||||||||| | | |||||||||||| ||||||  | |||||||| ||||     
T  19511373 taaaagaggatttatatttatctcgagagattttatcaagaattgattaagaaaaagttttagccaattaaatttattattttttggaaatcaatggaga 19511472  T
Q  324 taatgatatgtaattaagaaaaggt 348  Q
    ||||  |  ||||||||| ||||||    
T  19511473 taatagtgagtaattaaggaaaggt 19511497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 1985025 - 1985086
Alignment:
Q  280 gtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaag 341  Q
    |||||| |||||||||||||||||||||  |||||||||| |||||||| ||||||||||||    
T  1985025 gtctcagccaattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaag 1985086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 6110261 - 6110303
Alignment:
Q  186 atcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    |||||||||||||||||||| ||||||| ||||||||||||||    
T  6110261 atcattccttatttattatcttgatattctgtcatttttaaaa 6110303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 25102657 - 25102776
Alignment:
Q  54 cttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccattgtaatttttatcgtgagtataggc 153  Q
    |||||||||| | |||| ||||||||| | |||  ||||||||||  |||||| | ||||||  ||| || |  |||||||||||||| |||||||||||    
T  25102657 cttaaatctcatgtttgatgcaccaaatagataggataaaataaattattttcgtatcctatcgtgaattacttttgtaatttttatcctgagtataggc 25102756  T
Q  154 tgggttataacctatcttga 173  Q
    || |||| || ||| |||||    
T  25102757 tgagttacaaactaacttga 25102776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 38041501 - 38041588
Alignment:
Q  230 agcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaa 317  Q
    |||||| ||| ||||||| ||||||| |||||||||||||||  |||||  | ||||||| ||| |||||||||| |||  |||||||    
T  38041501 agcattgctaattatctaaagagattatatcaagaattgatcgcgaaaagatttcaaccacttagatttgttattggctgaaaatcaa 38041588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 44600988 - 44601053
Alignment:
Q  241 ttatctatagagattttatcaagaatt-gatcaagaaaaagtctcaaccaattaaatttgttatttg 306  Q
    |||| ||||||| |||||||||||||| ||| ||||||| || |||| |||||||||||||||||||    
T  44600988 ttatttatagagtttttatcaagaatttgat-aagaaaatgtttcaatcaattaaatttgttatttg 44601053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 224 - 348
Target Start/End: Complemental strand, 13716855 - 13716731
Alignment:
Q  224 taaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggagg 323  Q
    |||||||||||| ||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    ||||||| |||||    
T  13716855 taaaagagcattgctatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggagg 13716756  T
Q  324 taatgatatgtaattaagaaaaggt 348  Q
    ||||  | |||||||||||||||||    
T  13716755 taatagtgtgtaattaagaaaaggt 13716731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 227 - 348
Target Start/End: Complemental strand, 32976164 - 32976041
Alignment:
Q  227 aagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggt-- 324  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |||||||| | ||||      
T  32976164 aagagcaatgctatttatctagagagattttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaaggtaa 32976065  T
Q  325 aatgatatgtaattaagaaaaggt 348  Q
    |||| |||||||||||||||||||    
T  32976064 aatggtatgtaattaagaaaaggt 32976041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 348
Target Start/End: Original strand, 20142936 - 20143055
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatg 328  Q
    |||||||  |||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||   |||||||||| ||||||||    
T  20142936 gagcattgttatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatg 20143035  T
Q  329 atatgtaattaagaaaaggt 348  Q
    || |||||||||| ||||||    
T  20143036 atgtgtaattaaggaaaggt 20143055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 40619863 - 40619665
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    ||||||||||||||| ||||||| |||||||||| | |||| ||||||||||  |||| |||||||||||||||||  | || |||  ||||||||| |     
T  40619863 atatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaaagggatatgataaaataaaccatttttctatcatatcctgactttccttc 40619764  T
Q  130 gtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    ||||||| |||| |||||||||| ||||||| ||  |||  | || |||||| || |||||||||||||||||| | ||||||| ||| ||||||||||    
T  40619763 gtaatttctatcctgagtataggttgggttagaaattatacttatgggattagaagatcattccttatttattaccttgatattctgttatttttaaaa 40619665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 41595236 - 41595433
Alignment:
Q  31 tatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccattg 130  Q
    |||||||||||||| ||||| | |||||||||| | |||| ||||||||||| ||   |||||||||||||| ||  | || |||| |||||||||||||    
T  41595236 tatgatacattaatcatatcgtgcttaaatctcatgtttgatgcaccaaagagattggataaaataaaccatatttctatcatattctgactttccattg 41595335  T
Q  131 taatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
    |||||| |||| |||||||| | || |||| ||  |||| |||| |||||| || ||||||  |||||||||||| ||||||| | ||||||||||||    
T  41595336 taatttctatcctgagtataagttgagttagaaattatcctgatgggattagaagatcattttttatttattatcttgatattctttcatttttaaaa 41595433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 13996320 - 13996137
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    ||||||||||||||||||||||| |||||||||| | |||| ||||||||||  | || |||||||||| ||| ||  | || |||  ||||||||| ||    
T  13996320 atatgatacattaattatatcctccttaaatctcatgtttgatgcaccaaagggacatgataaaataaatcatgtttctatcatatcctgactttccttt 13996221  T
Q  130 gtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatatt 213  Q
    ||||||| |||| |||||||| | ||||||| ||  |||| |||| |||||| || |||||||||||||||||||  |||||||    
T  13996220 gtaatttctatcctgagtataagttgggttagaaattatcctgatgggattagaagatcattccttatttattattttgatatt 13996137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 13349675 - 13349474
Alignment:
Q  23 agacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgact 122  Q
    |||||| ||||||||||||||||||||||| |||||||||| | |||| |||||||||   |||  ||||||||||| || ||||| |||| |  | |||    
T  13349675 agacaggatatgatacattaattatatcctacttaaatctcatgtttgatgcaccaaatggataggataaaataaacaatattcttatcctctcctaact 13349576  T
Q  123 ttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcattt 222  Q
    |||| ||||||||| |||| | |||||| | || |||| ||  |||| ||||  ||||| || |||||||||||||||||||| ||||||| || |||||    
T  13349575 ttcctttgtaatttctatcctaagtatatgatgagttagaaattatcctgatgcgattagaagatcattccttatttattatcttgatattctgccattt 13349476  T
Q  223 tt 224  Q
    ||    
T  13349475 tt 13349474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 27338704 - 27338902
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    ||||||| || ||||||||||||||| ||||||| |||||||||| | |||| ||||| |||   |||| |||||||||||||||||  | ||||||  |    
T  27338704 agggagataggatatgatacattaatcatatcctacttaaatctcatgtttgatgcactaaaatgatatgataaaataaaccatttttctatcctatcct 27338803  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    |||||||| ||||||||||           ||||||| |||| ||   ||| |||| |||||| ||||||||||||||||||||||| ||||||| ||||    
T  27338804 gactttcctttgtaatttt-----------taggctgagttagaaatgatcctgatgggattataatatcattccttatttattatcttgatattctgtc 27338892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 348
Target Start/End: Original strand, 37714391 - 37714510
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatg 328  Q
    ||||||| ||||||||||| |||| |||||||||  ||| |||||||||| || |||||||||||||||||||||||| | |||||||| |||| |||||    
T  37714391 gagcattgctatttatctagagagtttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatg 37714490  T
Q  329 atatgtaattaagaaaaggt 348  Q
     | |||||||||| ||||||    
T  37714491 gtgtgtaattaaggaaaggt 37714510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 238 - 341
Target Start/End: Complemental strand, 38320331 - 38320228
Alignment:
Q  238 tatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaat 337  Q
    |||||||||| |||| |||||||||||||| ||||||||||  | |||||||||||||||||||||||| | |||||||| |||||||||||| |||||     
T  38320331 tatttatctagagagtttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatgatgtgtaaa 38320232  T
Q  338 taag 341  Q
    ||||    
T  38320231 taag 38320228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 37899647 - 37899545
Alignment:
Q  225 aaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggt 324  Q
    ||||||||||| ||||||||||| |||| ||||||||| |||| |||||||||| || |||||||||||||||||| |||||    ||||||| ||||||    
T  37899647 aaaagagcattgctatttatctagagagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaaaggaggt 37899548  T
Q  325 aat 327  Q
    |||    
T  37899547 aat 37899545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 347
Target Start/End: Complemental strand, 31645229 - 31645119
Alignment:
Q  238 tatttatctatagagattttatcaagaattgatcaagaaaaa-gtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaa 336  Q
    |||||||||| |||| |||||||||||||| ||||| ||||| |||| |||||||||||||| | |||||   |||||||||  | |||||||| |||||    
T  31645229 tatttatctagagagtttttatcaagaatttatcaaaaaaaatgtcttaaccaattaaatttttaatttggcggaaatcaagaaacgtaatgatgtgtaa 31645130  T
Q  337 ttaagaaaagg 347  Q
    |||||||||||    
T  31645129 ttaagaaaagg 31645119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 346
Target Start/End: Complemental strand, 19945866 - 19945747
Alignment:
Q  227 aagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaa 326  Q
    ||||||||| |||||||| || |||| |||||| ||||||| || || |||| |||||   |||||||||||||||||||   ||||| |||||||||||    
T  19945866 aagagcattgctatttatttagagagtttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaa 19945767  T
Q  327 tgatatgtaattaagaaaag 346  Q
    || | |||||||||| ||||    
T  19945766 tggtgtgtaattaaggaaag 19945747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 37485595 - 37485706
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    |||| ||| |||||| ||||||| |||||||||| | |||| ||||||||| | |||| |||||||||||||||||| | || |||  ||||||||| ||    
T  37485595 atataatatattaatcatatcctgcttaaatctcatgtttgatgcaccaaaaagatatgataaaataaaccattttcctatcatatcctgactttccttt 37485694  T
Q  130 gtaatttttatc 141  Q
    ||||||| ||||    
T  37485695 gtaatttctatc 37485706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 4434285 - 4434359
Alignment:
Q  249 agagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggagg 323  Q
    ||||||||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||   |||||||||||||    
T  4434285 agagattttattaagaattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaagggagg 4434359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 27407416 - 27407502
Alignment:
Q  255 tttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaag 341  Q
    ||||||||||||||||||||||||  | ||| ||||||||||||||||||| |  |||||||||| || ||||| | ||||||||||    
T  27407416 tttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaag 27407502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 340
Target Start/End: Original strand, 3167872 - 3167975
Alignment:
Q  237 ctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaa 336  Q
    |||||||| || | || |||||| |||||||  | ||||||| ||||||||||||||||||| |||||||   |||||||| | |||||||||| |||||    
T  3167872 ctatttatttaaaaagtttttattaagaatttgttaagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgtgtaa 3167971  T
Q  337 ttaa 340  Q
    ||||    
T  3167972 ttaa 3167975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 35457378 - 35457480
Alignment:
Q  238 tatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaat 337  Q
    |||||||  |||||| |||||||||||||| || ||||||| || |||| ||||||||||| ||||||    |||||||| |||||||||| | ||||||    
T  35457378 tatttatgcatagagtttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaat 35457476  T
Q  338 taag 341  Q
    ||||    
T  35457477 taag 35457480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 27007177 - 27007235
Alignment:
Q  269 atcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaat 327  Q
    |||||||||  ||||||||||| |||||||||||||||   ||||||||||||||||||    
T  27007177 atcaagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaat 27007235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 34355880 - 34355975
Alignment:
Q  118 tgactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatatt 213  Q
    |||||| || ||||||||||||||  ||||||| | ||| ||||||  || |  |||||||||| ||  ||||||||||||||||||| |||||||    
T  34355880 tgacttgcctttgtaatttttatcccgagtataagttggattataaattacccagataggattagaaattcattccttatttattatcatgatatt 34355975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 19695492 - 19695550
Alignment:
Q  22 gagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaa 80  Q
    ||||||| ||||||||||||||| ||||||| | |||||||| | |||| |||||||||    
T  19695492 gagacaggatatgatacattaatcatatcctacgtaaatctcatgtttgatgcaccaaa 19695550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 19695769 - 19695863
Alignment:
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatatt 213  Q
    |||||| | ||||||||| |||| |||||||| |||| |||| ||  |||| |||| | |||| || ||||| |||||||||||||| |||||||    
T  19695769 gacttttctttgtaatttctatcttgagtataagctgagttagaaattatcctgatggaattagaagatcatcccttatttattatcttgatatt 19695863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 31845403 - 31845452
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaa 278  Q
    |||||||  |||||||| | |||||||||||||||||||||| |||||||    
T  31845403 gagcattgttatttatccagagagattttatcaagaattgattaagaaaa 31845452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 14131164 - 14131236
Alignment:
Q  269 atcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaag 341  Q
    |||||||||| ||||  ||||||||||| |||||||||   ||||||||| ||| ||||| | ||||||||||    
T  14131164 atcaagaaaatgtctggaccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaag 14131236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 24068262 - 24068140
Alignment:
Q  223 ttaaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggag 322  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||   ||||||| ||||    
T  24068262 ttaaacgagcattgctatttatctagagagattttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttgc-caaaatcaaaggag 24068164  T
Q  323 gtaatgatatgtaattaagaaaag 346  Q
    || ||| | |||||||||| ||||    
T  24068163 gtgatggtgtgtaattaaggaaag 24068140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 37246148 - 37246355
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||||||  ||||||||||||||| ||||||| ||||||| || | |||| ||||| ||| | |||  ||||||||| |||||| | |  | |||| |    
T  37246148 agggagacatgatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaaaagataggataaaataacccatttcccta-catattct 37246246  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    |||||||| ||||||||| |||| |||||||||||| ||||| ||  |||| |||  |||||| || |||||||||||||||||||| ||||||| || |    
T  37246247 gactttcctttgtaatttatatcttgagtataggctaggttagaaattatcctgaggggattagaagatcattccttatttattatcttgatattctgcc 37246346  T
Q  219 atttttaaa 227  Q
    |||||||||    
T  37246347 atttttaaa 37246355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 16295324 - 16295528
Alignment:
Q  22 gagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgac 121  Q
    |||||| |||||||||||||||| ||||||| ||||||| || | |||| ||||| ||||| |||  ||| ||||||| |||| | | || |||  ||||    
T  16295324 gagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaatttccctatcatatcctgac 16295423  T
Q  122 tttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatt 221  Q
    ||||| ||||||||| |||| ||||||||| || ||||| ||  |||| |||| |||||  || |||||||||||||||||||| ||||||| |  ||||    
T  16295424 tttcctttgtaatttatatcctgagtatagactaggttagaaattatc-tgatgggattggaagatcattccttatttattatcttgatattctaccatt 16295522  T
Q  222 tttaaa 227  Q
    ||||||    
T  16295523 tttaaa 16295528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 16303026 - 16303230
Alignment:
Q  22 gagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgac 121  Q
    |||||| |||||||||||||||| ||||||| ||||||| || | |||| ||||| ||||| |||  ||| ||||||| |||| | | || |||  ||||    
T  16303026 gagacataatatgatacattaatcatatcctgcttaaatatcatgtttgatgcactaaagagatagcatacaataaacaatttccctatcatatcctgac 16303125  T
Q  122 tttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatt 221  Q
    ||||| ||||||||| |||| ||||||||| || ||||| ||  |||| |||| |||||  || |||||||||||||||||||| ||||||| |  ||||    
T  16303126 tttcctttgtaatttatatcctgagtatagactaggttagaaattatc-tgatgggattggaagatcattccttatttattatcttgatattctaccatt 16303224  T
Q  222 tttaaa 227  Q
    ||||||    
T  16303225 tttaaa 16303230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 15268611 - 15268802
Alignment:
Q  21 ggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatga 120  Q
    |||||||| ||||||||||||||| ||||||| || ||||||| | |||| | || ||||   |||  |||||||||||||||||| | ||||||   ||    
T  15268611 ggagacaggatatgatacattaatcatatcctgctgaaatctcatgtttgatacaacaaatggataggataaaataaaccattttcctatcctatcccga 15268710  T
Q  121 ctttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatatt 213  Q
    |||||| |||||||||||||  | |||||| ||||||||| ||  |||| | || ||||||||| ||| |||||||||||||||| |||||||    
T  15268711 ctttcctttgtaatttttattctaagtatatgctgggttagaaattatcctaat-ggattaaaagatcgttccttatttattatcttgatatt 15268802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 348
Target Start/End: Original strand, 29414352 - 29414469
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatg 328  Q
    ||||||| |||||||||||  ||| ||||||||| ||||||||||||||| |||||| |||||||||||||||||||||   ||||||||| ||||||||    
T  29414352 gagcattgctatttatcta--gagtttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatg 29414449  T
Q  329 atatgtaattaagaaaaggt 348  Q
     | | |||||||| ||||||    
T  29414450 gtgtttaattaaggaaaggt 29414469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 32962050 - 32962221
Alignment:
Q  30 atatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccatt 129  Q
    ||||||||||||||| ||||||| |||||||||| | |||| |||||||| |  ||| |||||||||||| |||||| | || |||  ||||||||| ||    
T  32962050 atatgatacattaatcatatcctgcttaaatctcatgtttgatgcaccaatgggatagaataaaataaactattttcctatcatatcctgactttccttt 32962149  T
Q  130 gtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttat 201  Q
    ||||||| |||| |||||| | |||| |||||||  |||| ||||  ||||| || ||||||||| ||||||    
T  32962150 gtaatttctatcctgagtacaagctgagttataaattatcctgatgagattagaagatcattcctcatttat 32962221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 40953265 - 40953421
Alignment:
Q  72 tgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccattgtaatttttatcgtgagtataggctgggttataacctatctt 171  Q
    ||||||||||| |||| || ||||||| ||||||  | || |||  ||||||||| |||||||||||||| |||||||||||||||||| ||  |||  |    
T  40953265 tgcaccaaagagatatgatgaaataaatcatttttctatcatatcctgactttcctttgtaatttttatcctgagtataggctgggttagaaattattat 40953364  T
Q  172 gataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaaa 228  Q
     || |||||| || |||||||||||||||||| | ||||||| || | |||||||||    
T  40953365 aatgggattagaagatcattccttatttattaccttgatattctgccctttttaaaa 40953421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 16456489 - 16456688
Alignment:
Q  29 aatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattatgactttccat 128  Q
    ||||||||| || ||| |||| || ||||||| || | |||| ||||||||||| |||  ||||||||||| ||||| || ||||||  ||| || |  |    
T  16456489 aatatgatatatcaatcatattctacttaaatatcatgtttgatgcaccaaagagataagataaaataaactatttttttatcctatcctgatttgcttt 16456588  T
Q  129 tgtaatttttatcgtgagtataggctgggttataacctatcttgataggatt-aaaatatcattccttatttattatcgtgatattatgtcatttttaaa 227  Q
    ||||||| ||||| |||||||| |||  |||| ||  ||||||||||||||| ||||||| ||| ||||||||| ||| ||| ||| |||||||||||||    
T  16456589 tgtaattcttatcttgagtataagctacgttagaaattatcttgataggattaaaaatat-atttcttatttatgatcatgacattctgtcatttttaaa 16456687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 340
Target Start/End: Complemental strand, 36947368 - 36947254
Alignment:
Q  228 agagcattcctatttatctatagagattttatcaagaattgatcaagaaaaa--gtctcaaccaattaaatttgttatttgcttgaaatcaagggaggta 325  Q
    ||||||||  |||||||||| |||||||||||||||||||||| || |||||  || |||| ||||||||||||||||| ||   |||| ||||||||||    
T  36947368 agagcattgttatttatctagagagattttatcaagaattgataaaaaaaaaatgtatcaatcaattaaatttgttattggccaaaaatgaagggaggta 36947269  T
Q  326 atgatatgtaattaa 340  Q
    ||||| | |||||||    
T  36947268 atgatgtataattaa 36947254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 5686437 - 5686319
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtc--------tcaaccaattaaatttgttatttgcttgaaatcaaggg 320  Q
    ||||||| ||||||||||  ||| |||| ||||||||||||||||||||| |||        |||| ||||||||||||||||||||  |||||||||||    
T  5686437 gagcattgctatttatcttgagaaattt-atcaagaattgatcaagaaaaggtcccaaactctcaatcaattaaatttgttatttgccggaaatcaaggg 5686339  T
Q  321 aggtaatgatatgtaattaa 340  Q
    ||||||| ||||||||||||    
T  5686338 aggtaataatatgtaattaa 5686319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 43596815 - 43597024
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaaccattttcttttcctattat 118  Q
    |||||| ||| ||||||||||||||| ||||||  ||||||| || | |||| ||||| ||||| |||  |||||||||| ||||||  | || |||       
T  43596815 agggagtcaggatatgatacattaatcatatccgacttaaatatcatgtttgatgcacgaaagagataggataaaataaatcatttttctatcatatccc 43596914  T
Q  119 gactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtc 218  Q
    |||||||| ||||||||| |||| |||||||||  || |||| ||  |||| ||||  ||||| || |||| ||||||||||| ||| | ||||| || |    
T  43596915 gactttcctttgtaatttatatcctgagtatagattgagttaaaaattatcctgatgagattagaagatcactccttatttataatctttatattctgcc 43597014  T
Q  219 atttttaaaa 228  Q
    ||||||||||    
T  43597015 atttttaaaa 43597024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 27696321 - 27696421
Alignment:
Q  128 ttgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaa 227  Q
    ||||||||| |||| || ||||| ||| ||||| ||  ||||||||| ||||||  | |||||||||||||||||||| ||||||| |||||||||||||    
T  27696321 ttgtaatttatatcctgtgtataagctaggttagaaattatcttgatgggattaggagatcattccttatttattatcttgatattctgtcatttttaaa 27696420  T
Q  228 a 228  Q
    |    
T  27696421 a 27696421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 29543753 - 29543676
Alignment:
Q  228 agagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttattt 305  Q
    ||||||||  |||||||| | |||| ||||||||| |||| ||||||||||  |||||||||||||||||||||||||    
T  29543753 agagcattgttatttatcaagagagtttttatcaaaaatttatcaagaaaatatctcaaccaattaaatttgttattt 29543676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 348
Target Start/End: Original strand, 33543318 - 33543434
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatg 328  Q
    |||||||  ||||||| ||||||  ||||||||| |||| || || |||| |||||||||||| ||||||||||||||  |||||||||||||| |||||    
T  33543318 gagcattgttatttat-tatagaatttttatcaaaaatttataaa-aaaatgtctcaaccaataaaatttgttatttggctgaaatcaagggagataatg 33543415  T
Q  329 atatgtaattaagaaaaggt 348  Q
     | ||||||||| |||||||    
T  33543416 -tgtgtaattaaaaaaaggt 33543434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 38585232 - 38585117
Alignment:
Q  225 aaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggt 324  Q
    ||||||| |||  ||||||| || |||| |||||||||||||| |||||||||| || ||||  |||||||||||| |||||   |||||||| ||||||    
T  38585232 aaaagagtattgatatttatttagagagtttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggt 38585133  T
Q  325 aatgatatgtaattaa 340  Q
    |||  | |||||||||    
T  38585132 aattgtgtgtaattaa 38585117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 341
Target Start/End: Complemental strand, 5718595 - 5718475
Alignment:
Q  229 gagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctca-ac-------caattaaatttgttatttgcttgaaatcaaggg 320  Q
    |||||||  |||||||||  |||||||||||||||||||||||||||||| |||||| ||       ||||||||||| |||||||   ||||||||||     
T  5718595 gagcattggtatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagactcttagtcaattaaatttattatttgtcggaaatcaagga 5718496  T
Q  321 aggtaatgatatgtaattaag 341  Q
    |||||||| | ||||||||||    
T  5718495 aggtaatggtgtgtaattaag 5718475  T

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Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 35393710 - 35393820
Alignment:
Q  231 gcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgat 330  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||| ||| | | |||||| |||||  ||||  |   ||||||||||||||||||      
T  35393710 gcattgctatttatctagagagtttttatcaagaattgatcaagaaagagtttaagccaattgaatttcatattgaccgaaaatcaagggaggtaatggg 35393809  T
Q  331 atgtaattaag 341  Q
     ||||||||||    
T  35393810 gtgtaattaag 35393820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 11656454 - 11656342
Alignment:
Q  90 taaaataaaccattttcttttcctattatgactttccattgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatca 189  Q
    ||||||||||||||||  | ||||||  ||||||||| ||||||||| |||| ||| |||||| ||||||| ||  |||| | ||  ||||| || ||||    
T  11656454 taaaataaaccatttttctatcctatcctgactttcctttgtaatttctatcctgaatataggttgggttagaaattatcctaatgagattagaagatca 11656355  T
Q  190 ttccttatttatt 202  Q
    |||||||||||||    
T  11656354 ttccttatttatt 11656342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 11657082 - 11657003
Alignment:
Q  19 agggagacagaatatgatacattaattatatccttcttaaatctcttatttgctgcaccaaagatatataataaaataaa 98  Q
    |||||||||  ||||||||||||||| ||||||| |||||||||| | |||| || |||||||  |||| ||||||||||    
T  11657082 agggagacaatatatgatacattaatcatatcctgcttaaatctcatgtttgatgtaccaaagggatatgataaaataaa 11657003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 26415560 - 26415639
Alignment:
Q  269 atcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaagaaaaggt 348  Q
    |||||||||| ||||||||||||||||||| |||||||   ||||| ||  ||| ||||||| |||||||||| ||||||    
T  26415560 atcaagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaaggt 26415639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 25124400 - 25124457
Alignment:
Q  291 ttaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaattaagaaaaggt 348  Q
    ||||| ||||||||||   ||||||||| ||| ||||||| |||||||||||||||||    
T  25124400 ttaaagttgttatttggcggaaatcaagagagataatgatgtgtaattaagaaaaggt 25124457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 42180485 - 42180517
Alignment:
Q  19 agggagacagaatatgatacattaattatatcc 51  Q
    |||||||||||||||||||||||||| ||||||    
T  42180485 agggagacagaatatgatacattaatcatatcc 42180517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 18598 - 18679
Alignment:
Q  225 aaaagagcattcctatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttg 306  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |  |||||||||||||||||||    
T  18598 aaaagagcattgctatttatctaaagagattttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttg 18679  T

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Target: scaffold0018 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 348
Target Start/End: Complemental strand, 70056 - 69946
Alignment:
Q  238 tatttatctatagagattttatcaagaattgatcaagaaaaagtctcaaccaattaaatttgttatttgcttgaaatcaagggaggtaatgatatgtaat 337  Q
    |||||||||| |||| ||||||| | ||||||||||||||| || ||| |||||||||||||||||| ||  ||||||||||||| |||||   ||||||    
T  70056 tatttatctagagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaat 69957  T
Q  338 taagaaaaggt 348  Q
    |||| ||||||    
T  69956 taaggaaaggt 69946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 4043 - 3943
Alignment:
Q  128 ttgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaa 227  Q
    |||||||||||||| | |||||| | || |||  || ||||| ||||||||||| ||  ||||||||| ||||||| | ||||||||| || ||||||||    
T  4043 ttgtaatttttatcttaagtataagatgagttggaaactatcatgataggattacaaattcattccttctttattaccatgatattatatcgtttttaaa 3944  T
Q  228 a 228  Q
    |    
T  3943 a 3943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 4059 - 4159
Alignment:
Q  128 ttgtaatttttatcgtgagtataggctgggttataacctatcttgataggattaaaatatcattccttatttattatcgtgatattatgtcatttttaaa 227  Q
    |||||||||||||| | |||||| | || |||  || ||||| ||||||||||| ||  ||||||||| ||||||| | ||||||||| || ||||||||    
T  4059 ttgtaatttttatcttaagtataagatgagttggaaactatcatgataggattacaaattcattccttctttattaccatgatattatatcgtttttaaa 4158  T
Q  228 a 228  Q
    |    
T  4159 a 4159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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