View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7753_high_14 (Length: 347)

Name: NF7753_high_14
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7753_high_14
NF7753_high_14
[»] chr2 (6 HSPs)
chr2 (16-310)||(37493940-37494238)
chr2 (247-301)||(17213795-17213849)
chr2 (250-300)||(36225592-36225642)
chr2 (247-299)||(6735405-6735457)
chr2 (139-202)||(2262776-2262839)
chr2 (252-295)||(36501904-36501946)
[»] chr8 (4 HSPs)
chr8 (248-309)||(30011816-30011877)
chr8 (246-301)||(34742795-34742850)
chr8 (168-241)||(26819297-26819368)
chr8 (252-296)||(39994002-39994046)
[»] chr1 (6 HSPs)
chr1 (245-306)||(12395503-12395564)
chr1 (139-219)||(16979584-16979664)
chr1 (168-198)||(12395624-12395654)
chr1 (250-296)||(14303893-14303939)
chr1 (251-301)||(24126847-24126897)
chr1 (248-301)||(1879538-1879591)
[»] chr5 (7 HSPs)
chr5 (246-301)||(28578533-28578588)
chr5 (247-308)||(29039013-29039073)
chr5 (242-292)||(9800882-9800932)
chr5 (248-300)||(16962139-16962191)
chr5 (245-301)||(21815311-21815367)
chr5 (170-238)||(35035587-35035655)
chr5 (245-301)||(39156729-39156785)
[»] chr7 (10 HSPs)
chr7 (247-301)||(5661890-5661944)
chr7 (245-305)||(46766012-46766072)
chr7 (241-286)||(39538403-39538448)
chr7 (261-301)||(27721394-27721434)
chr7 (251-297)||(29117901-29117947)
chr7 (168-241)||(24547700-24547773)
chr7 (171-224)||(36853083-36853136)
chr7 (240-284)||(8960971-8961015)
chr7 (245-301)||(23113413-23113469)
chr7 (170-241)||(35169988-35170057)
[»] chr4 (9 HSPs)
chr4 (240-298)||(7601437-7601495)
chr4 (246-300)||(40263998-40264052)
chr4 (247-301)||(24362306-24362361)
chr4 (246-301)||(35341481-35341536)
chr4 (168-214)||(19392505-19392551)
chr4 (171-201)||(36371785-36371815)
chr4 (172-241)||(21570851-21570920)
chr4 (172-221)||(21571017-21571066)
chr4 (245-301)||(19028080-19028136)
[»] chr3 (2 HSPs)
chr3 (250-299)||(47702682-47702731)
chr3 (275-303)||(33880317-33880345)
[»] chr6 (1 HSPs)
chr6 (245-301)||(16487543-16487599)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 37493940 - 37494238
Alignment:
Q  16 atacaaccatgaagatggaggaatagaatgtctattaatggataaaaacattccagtcacaaaatgtagcagtcacattgagactgcggtagaggttacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37493940 atacaaccatgaagatggaggaatagaatgtctattaatggataaaaacattccagtcacaaaatgtagcagtcacattgagactgcggtagaggttacc 37494039  T
Q  116 ggttataaaacannnnnnnaggatttaatttttatacactgttaatgtcaagagttttacactgtcagcacatcacaaccaatcataaatgtgactttat 215  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37494040 ggttataaaacatttttttaggatttaatttttatacactgttaatgtcaagagttttacactgtcagcacatcacaaccaatcataaatgtgactttat 37494139  T
Q  216 aagtagttacgatcaaattcaaaca----taacggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaagtctttcta 310  Q
    |||||||||||||||||||||||||    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37494140 aagtagttacgatcaaattcaaacatgtttaacagttatgattgattgacagtgtaaaacatattcacactgacagtgtatatgaattaagtctttcta 37494238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 17213795 - 17213849
Alignment:
Q  247 ttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    |||||||||||||||||| ||||  || |||||||||||| ||||||||||||||    
T  17213795 ttatgattgattgacagtataaactatctttacactgacaatgtatatgaattaa 17213849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 36225642 - 36225592
Alignment:
Q  250 tgattgattgacagtgtaaaacatatttacactgacagtgtatatgaatta 300  Q
    |||||||||| |||||||||| || |||||||||||| |||||||||||||    
T  36225642 tgattgattggcagtgtaaaatatctttacactgacaatgtatatgaatta 36225592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 6735405 - 6735457
Alignment:
Q  247 ttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaatt 299  Q
    ||||||||| ||||||||||||||||| | ||||||||||||| |||| ||||    
T  6735405 ttatgattggttgacagtgtaaaacatttgtacactgacagtgcatataaatt 6735457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 2262776 - 2262839
Alignment:
Q  139 tttaatttttatacactgttaatgtcaagagttttacactgtcagcacatcacaaccaatcata 202  Q
    ||||||||| ||||||  | ||||| || |||||||||||||||||||| ||||||||| ||||    
T  2262776 tttaattttcatacacaatcaatgtgaacagttttacactgtcagcacaacacaaccaaccata 2262839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 36501946 - 36501904
Alignment:
Q  252 attgattgacagtgtaaaacatatttacactgacagtgtatatg 295  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  36501946 attggttgacagtgtaaaa-atatttacactgacagtgtatatg 36501904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 30011816 - 30011877
Alignment:
Q  248 tatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaagtctttct 309  Q
    ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||    
T  30011816 tatgattgattgacagtgtaaaaaatgtttaaactgacagtgtatatgaattaagtcattct 30011877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 34742795 - 34742850
Alignment:
Q  246 gttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    |||||||| ||||||  |||||||| ||||||||| |||| |||||||||||||||    
T  34742795 gttatgatggattgatggtgtaaaatatatttacattgacggtgtatatgaattaa 34742850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 26819368 - 26819297
Alignment:
Q  168 agttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaacat 241  Q
    ||||||||||| | |||| |||||||||||||||   |||||||||| |||||||| |||| ||| ||||||||    
T  26819368 agttttacactattagcaaatcacaaccaatcat--gtgtgactttagaagtagttgcgataaaagtcaaacat 26819297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 39994002 - 39994046
Alignment:
Q  252 attgattgacagtgtaaaacatatttacactgacagtgtatatga 296  Q
    |||||||||||||||||||| | |||||||||||| || ||||||    
T  39994002 attgattgacagtgtaaaacttttttacactgacaatgcatatga 39994046  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 12395564 - 12395503
Alignment:
Q  245 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaagtctt 306  Q
    |||||||||||||||||| |||||||  | ||||||||||||||||||||||||||| ||||    
T  12395564 ggttatgattgattgacactgtaaaatctctttacactgacagtgtatatgaattaaatctt 12395503  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 16979584 - 16979664
Alignment:
Q  139 tttaatttttatacactgttaatgtcaagagttttacactgtcagcacatcacaaccaatcataaatgtgactttataagt 219  Q
    ||||||||| ||||||||| | ||| || || |||||||||||| || |||||||||||  ||| ||||||||||| ||||    
T  16979584 tttaattttgatacactgtcagtgtaaaaagatttacactgtcaacaaatcacaaccaacaatatatgtgactttagaagt 16979664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 198
Target Start/End: Complemental strand, 12395654 - 12395624
Alignment:
Q  168 agttttacactgtcagcacatcacaaccaat 198  Q
    |||||||||||||||||||||||||||||||    
T  12395654 agttttacactgtcagcacatcacaaccaat 12395624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 14303939 - 14303893
Alignment:
Q  250 tgattgattgacagtgtaaaacatatttacactgacagtgtatatga 296  Q
    ||||||||||||||||||||| || |||||| ||||| |||||||||    
T  14303939 tgattgattgacagtgtaaaaaatctttacattgacaatgtatatga 14303893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 24126897 - 24126847
Alignment:
Q  251 gattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    |||||||||| ||||||||| ||||||||||  ||| ||||||||||||||    
T  24126897 gattgattgatagtgtaaaagatatttacacaaacaatgtatatgaattaa 24126847  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 1879538 - 1879591
Alignment:
Q  248 tatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    ||||||||||||| | ||||||| ||||||||||| || |||| ||||||||||    
T  1879538 tatgattgattgaaactgtaaaaaatatttacactaacggtgtgtatgaattaa 1879591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 28578588 - 28578533
Alignment:
Q  246 gttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    ||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||    
T  28578588 gttatgattgattgacaatgtaaaacatttttacattgaaagtgtatatgaattaa 28578533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 29039073 - 29039013
Alignment:
Q  247 ttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaagtctttc 308  Q
    |||| |||||||||| |||||||| | ||||||||||||| |||||||||||||| ||||||    
T  29039073 ttataattgattgac-gtgtaaaaaacatttacactgacaatgtatatgaattaattctttc 29039013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 9800932 - 9800882
Alignment:
Q  242 aacggttatgattgattgacagtgtaaaacatatttacactgacagtgtat 292  Q
    ||||||||| ||||||| || |||||| | |||||||||||||||||||||    
T  9800932 aacggttataattgattaactgtgtaataaatatttacactgacagtgtat 9800882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 16962191 - 16962139
Alignment:
Q  248 tatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaatta 300  Q
    |||||||||| |||||||||||| |  |||| ||||||||||||||| |||||    
T  16962191 tatgattgatcgacagtgtaaaaaaactttatactgacagtgtatataaatta 16962139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 21815311 - 21815367
Alignment:
Q  245 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    ||||||||||||||||||| || ||| ||||||||||||  |||| |||| ||||||    
T  21815311 ggttatgattgattgacagagtgaaaaatatttacactgttagtgcatatcaattaa 21815367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 35035655 - 35035587
Alignment:
Q  170 ttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaa 238  Q
    ||||||| |||||| | ||||||||||||||||  ||||| |||| ||||||||| ||| ||| |||||    
T  35035655 ttttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttatgattaaaatcaaa 35035587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 39156729 - 39156785
Alignment:
Q  245 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    ||||||||||||||||||| |||||| ||||||||| ||  |||| |||| ||||||    
T  39156729 ggttatgattgattgacagagtaaaaaatatttacattgttagtgcatatcaattaa 39156785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 5661890 - 5661944
Alignment:
Q  247 ttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    |||||||||||||||||||||||| || ||| |||||| ||||||||||||||||    
T  5661890 ttatgattgattgacagtgtaaaaaatctttccactgatagtgtatatgaattaa 5661944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 46766072 - 46766012
Alignment:
Q  245 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaagtct 305  Q
    ||||||||| ||||||| |||||  |  |||||||||||||||||||||||||||||||||    
T  46766072 ggttatgatcgattgactgtgtagtaagtatttacactgacagtgtatatgaattaagtct 46766012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 39538448 - 39538403
Alignment:
Q  241 taacggttatgattgattgacagtgtaaaacatatttacactgaca 286  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||    
T  39538448 taacggttataattgattgatagtataaaacatatttacactgaca 39538403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 27721394 - 27721434
Alignment:
Q  261 cagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  27721394 cagtgtaaaacataattacactgacagtgtacatgaattaa 27721434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 29117947 - 29117901
Alignment:
Q  251 gattgattgacagtgtaaaacatatttacactgacagtgtatatgaa 297  Q
    |||||||||||| | ||||| ||||||||||||| ||||||||||||    
T  29117947 gattgattgacaatctaaaaaatatttacactgatagtgtatatgaa 29117901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 24547700 - 24547773
Alignment:
Q  168 agttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaacat 241  Q
    |||||||||||||||  | ||||||||||||||||  ||||| |||| ||||||||| |||  || ||||||||    
T  24547700 agttttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgattgaagtcaaacat 24547773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 36853083 - 36853136
Alignment:
Q  171 tttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagtta 224  Q
    |||||| |||||| | ||||||||||||||||  |||||||||| |||||||||    
T  36853083 tttacattgtcagtaaatcacaaccaatcatatgtgtgactttagaagtagtta 36853136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 8961015 - 8960971
Alignment:
Q  240 ataacggttatgattgattgacagtgtaaaacatatttacactga 284  Q
    |||||| | |||||||||||||||||||||| || ||||||||||    
T  8961015 ataacgatcatgattgattgacagtgtaaaaaatctttacactga 8960971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 23113469 - 23113413
Alignment:
Q  245 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    |||||||||||||||||| |||||||  | ||||||||||||||  |||||| ||||    
T  23113469 ggttatgattgattgacattgtaaaaattctttacactgacagtagatatgagttaa 23113413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 35170057 - 35169988
Alignment:
Q  170 ttttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaacat 241  Q
    ||||||||||||| || |||| ||||||||||   |||||||||| ||||||||| ||| ||| ||||||||    
T  35170057 ttttacactgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaacat 35169988  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 7601437 - 7601495
Alignment:
Q  240 ataacggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaat 298  Q
    |||||| |||||||||||||||||||||||| || |||||||||| | |||||||||||    
T  7601437 ataacgattatgattgattgacagtgtaaaaaatctttacactgataatgtatatgaat 7601495  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 40263998 - 40264052
Alignment:
Q  246 gttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaatta 300  Q
    ||||||||||| ||||||||||||| |||||||||||| | ||| ||||||||||    
T  40263998 gttatgattgactgacagtgtaaaaaatatttacactgcctgtgcatatgaatta 40264052  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 24362361 - 24362306
Alignment:
Q  247 ttatgattgattgacagtgtaaaaca-tatttacactgacagtgtatatgaattaa 301  Q
    |||||||||| |||| |||||||| | |||||||| ||||||||||||||||||||    
T  24362361 ttatgattgactgaccgtgtaaaaaaatatttacattgacagtgtatatgaattaa 24362306  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 35341536 - 35341481
Alignment:
Q  246 gttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    ||||||||||||||||| ||||||| || ||||||| ||| |||||||| ||||||    
T  35341536 gttatgattgattgacaatgtaaaagatctttacaccgaccgtgtatataaattaa 35341481  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 19392505 - 19392551
Alignment:
Q  168 agttttacactgtcagcacatcacaaccaatcataaatgtgacttta 214  Q
    ||||||||||||||||| ||||||||||||||||   ||||||||||    
T  19392505 agttttacactgtcagcccatcacaaccaatcatctgtgtgacttta 19392551  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 36371785 - 36371815
Alignment:
Q  171 tttacactgtcagcacatcacaaccaatcat 201  Q
    |||||||||||||||||||||||||||||||    
T  36371785 tttacactgtcagcacatcacaaccaatcat 36371815  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 21570920 - 21570851
Alignment:
Q  172 ttacactgtcagcacatcacaaccaatcataaatgtgactttataagtagttacgatcaaattcaaacat 241  Q
    ||||| ||||||||||||||||||||||||   |||||||||| |||| || | ||| ||| ||||||||    
T  21570920 ttacattgtcagcacatcacaaccaatcatgtgtgtgactttagaagtcgtcatgataaaagtcaaacat 21570851  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 21571066 - 21571017
Alignment:
Q  172 ttacactgtcagcacatcacaaccaatcataaatgtgactttataagtag 221  Q
    ||||| |||||||||||||| ||||||||| | |||||||||| ||||||    
T  21571066 ttacattgtcagcacatcactaccaatcatgagtgtgactttagaagtag 21571017  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 19028080 - 19028136
Alignment:
Q  245 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    ||||||| |||||||||| |||||||  ||||||||||| ||||| |||| ||||||    
T  19028080 ggttatgcttgattgacattgtaaaagttatttacactgtcagtgcatatcaattaa 19028136  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 47702731 - 47702682
Alignment:
Q  250 tgattgattgacagtgtaaaacatatttacactgacagtgtatatgaatt 299  Q
    ||||||||||||||||||||| || |||||||| ||| | ||||||||||    
T  47702731 tgattgattgacagtgtaaaaaatctttacactaacaatatatatgaatt 47702682  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 33880345 - 33880317
Alignment:
Q  275 tttacactgacagtgtatatgaattaagt 303  Q
    |||||||||||||||||||||||||||||    
T  33880345 tttacactgacagtgtatatgaattaagt 33880317  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 16487599 - 16487543
Alignment:
Q  245 ggttatgattgattgacagtgtaaaacatatttacactgacagtgtatatgaattaa 301  Q
    ||||||||||||||||||| || ||| ||||||||||||  |||| |||| ||||||    
T  16487599 ggttatgattgattgacagagtgaaaaatatttacactgttagtgcatatcaattaa 16487543  T

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