View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7753_high_15 (Length: 343)
Name: NF7753_high_15
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 49 - 327
Target Start/End: Complemental strand, 23620033 - 23619759
Alignment:
| Q |
49 |
acatattgattgagacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaat |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
23620033 |
acatattgattgagacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagtgaagaatcttaaaaaaatgattgccaaaaccaat |
23619934 |
T |
|
| Q |
149 |
catagtcgaatatatttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctcccttatattgtttgct |
248 |
Q |
| |
|
|||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23619933 |
cataatggaatatatttgaagcacaatataaactcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctcccttatagtgtttgct |
23619834 |
T |
|
| Q |
249 |
cattctctctctttctttaatttcttgtactcccatgcctgttgaatgatgatatattgggatttgatgggataatctg |
327 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23619833 |
catt----ctctttctttaatttcttgtactcccatacctgttgaatgatgatatattgggatttgatgggataatctg |
23619759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 49 - 327
Target Start/End: Complemental strand, 23607744 - 23607472
Alignment:
| Q |
49 |
acatattgattgagacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaat |
148 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
23607744 |
acatattgaatgtgacattttgtccggaacaagtgatctatatacttttcaggaaagcggtcaagttaagaatcttaaaaaaatgattggtaaaaccaat |
23607645 |
T |
|
| Q |
149 |
catagtcgaatatatttgaagcacaatataaattcctatgatgatacagatgaatctc---aatcaaacctaactcaagcattcctcccttatattgttt |
245 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||||| | ||||| |
|
|
| T |
23607644 |
cataatcgaatatatttgaagcacaatataaactcctatggtgatgcagatgaatctcaataatcaaacctaactcaagcattcttcccttagaatgttt |
23607545 |
T |
|
| Q |
246 |
gctcattctctctctttctttaatttcttgtactcccatgcctgttgaatgatgatatattgggatttgatgggataatctg |
327 |
Q |
| |
|
||||| ||| || |||||||||||||| || | ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
23607544 |
tctcatgctc---------tttatttcttgtactcctatacttgttgaatgatgatatattgggattcgattggataatctg |
23607472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 237
Target Start/End: Complemental strand, 23578917 - 23578756
Alignment:
| Q |
75 |
gaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaatcatagtcgaatatatttgaagcacaa |
174 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| || |||||| | |||||||||| |||||||||| |
|
|
| T |
23578917 |
gaacaagtgatctatatacttttctggaaagcggtcaagttaagaatcttgaaaaaatgattgc-aaccccaatctaaatcgaatatatatgaagcacaa |
23578819 |
T |
|
| Q |
175 |
tataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctccctta |
237 |
Q |
| |
|
|||||| |||||||||||| |||| || ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
23578818 |
tataaactcctatgatgatgcagacgactctcaatcaaacccaactcaagcattcttccctta |
23578756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 23615107 - 23614944
Alignment:
| Q |
62 |
gacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaatcatagtcgaatat |
161 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||||| || |||||||| |
|
|
| T |
23615107 |
gacattttgtcaagaacaagtgatctttatacttttcaggaaagcggtcaagttaagaatccaaaaaaaatgattgg----tccaatcttaatcgaatat |
23615012 |
T |
|
| Q |
162 |
atttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattc |
229 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
23615011 |
atttgaagcacaatataaactcctatgatgatgcagatgactctcaatcaaacctaactaaagtattc |
23614944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 23625902 - 23625722
Alignment:
| Q |
50 |
catattgattgagacattttgttaggaacaagtgatctatata--cttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaa |
147 |
Q |
| |
|
|||||||| || |||| ||||| | ||||||||||| |||||| |||||||||||||| ||||||||||||||| | |||||| ||| ||||| |
|
|
| T |
23625902 |
catattgaatgtgacaatttgtcaagaacaagtgatttatatatacttttcaggaaagcggtcaagttaagaatcctaaaaaaatgattggcaa-tccaa |
23625804 |
T |
|
| Q |
148 |
tcatagtcgaatatatttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattc |
229 |
Q |
| |
|
|| || | ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
23625803 |
tcttaatggaatatatttgaagcacaatataaactcctatgatgatgcagatgactctcaatcaagcctaactcaagtattc |
23625722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 87 - 261
Target Start/End: Complemental strand, 23585149 - 23584976
Alignment:
| Q |
87 |
tatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaatcatagtcgaatatatttgaagcacaatataaattccta |
186 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| ||||||| | | |||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
23585149 |
tatatacttttcaagaaagtggtcaagttaagaatctaaagaaaatgattgcaaca-ccaatcttaatcgaatatatatgaagcacaatataaattccta |
23585051 |
T |
|
| Q |
187 |
tgatgatacagatgaatctcaatcaaacctaactcaagcattcctcccttatattgtttgctcattctctctctt |
261 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| ||||||| || | |||| | ||| ||||| ||||||||| |
|
|
| T |
23585050 |
tgatgatgcagatgactctcaatcaaacctaactctagcattcttctcatatagtattttctcatgctctctctt |
23584976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 23606293 - 23606225
Alignment:
| Q |
164 |
ttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctccc |
234 |
Q |
| |
|
||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
23606293 |
ttgaagcacaatataaactcctatgatgatgctgatga--ctcaatcaaacctaactccagcattcttccc |
23606225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University