View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_high_21 (Length: 286)
Name: NF7753_high_21
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 41073846 - 41074091
Alignment:
| Q |
22 |
catagataaaattttcttctttgcttcnnnnnnnnnnnnaatacctatagtggaacctgaagctaccatgcttcttccactttctaccactagattcact |
121 |
Q |
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| T |
41073846 |
catagataaaattttcttctttgcttctatatatatataaatacctatagtggaacctgaagctaccatgcttcttccactttctaccactagattcact |
41073945 |
T |
|
| Q |
122 |
gctatatgccagaagaatatcattcatggcagtaaaggaaattagcagcacaaggaaccaaaatagcactcatcagcatcaagaacaagaagggtgtgat |
221 |
Q |
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| T |
41073946 |
gctatatgccagaagaatatcattcatggcagtaaaggaaattagcagcacaaggaaccaaaatagtactcatcagcatcaagaacaagaagggtgtgat |
41074045 |
T |
|
| Q |
222 |
ccgtgcaagtcttttggccaaaagtgtagtcacttggtcaagaaac |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074046 |
ccgtgcaagtcttttggccaaaagtgtagtcacttggtcaagaaac |
41074091 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 40063998 - 40064050
Alignment:
| Q |
214 |
ggtgtgatccgtgcaagtcttttggccaaaagtgtagtcacttggtcaagaaac |
267 |
Q |
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|||||||||| |||| ||||||||||| |||| |||||||||||||||||||| |
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| T |
40063998 |
ggtgtgatcctagcaaatcttttggccataagt-tagtcacttggtcaagaaac |
40064050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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