View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_high_27 (Length: 254)
Name: NF7753_high_27
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 21945417 - 21945531
Alignment:
| Q |
118 |
acattatatatagatccatgtgatcatatgtggctattaaaatattccatcgtttttcattttgaaaataaaatatatgttgatttagattccaaatctg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21945417 |
acattatatatagatccatgtgatcatatgtggctattaaaatattccatcgtttttcattttgaaaataaaatatatgttgatttagattgcaaatctg |
21945516 |
T |
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| Q |
218 |
gcgtaaagtcatccc |
232 |
Q |
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||||||||||||||| |
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| T |
21945517 |
gcgtaaagtcatccc |
21945531 |
T |
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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 21945131 - 21945236
Alignment:
| Q |
19 |
ctagatccattcttgtttctgttatatctttcctttaaggtacttttaattgctttgatgcttgtgcatttaaatagagcgcaagacacacacattaata |
118 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21945131 |
ctagatccattcttgtttctgttatatctttcttttaaggtacttttaattgctt-----cttgtgcatttaaatagagcgcaagacacacacattaata |
21945225 |
T |
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| Q |
119 |
cattatatata |
129 |
Q |
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|||||||||| |
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| T |
21945226 |
tattatatata |
21945236 |
T |
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