View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_high_29 (Length: 250)
Name: NF7753_high_29
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 18271183 - 18270942
Alignment:
| Q |
1 |
ttggcttcaatcatcaagtccatacagctaattattgatcaaaaaagtagagagccacagaaactcctttcatctgagaccttatgaatagagtatcata |
100 |
Q |
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| T |
18271183 |
ttggcttcaatcatcaagtccttacagctaattattgatcaaaaaagtacagagccacagaaactcgtttcatctgagaccttctgaatagagtatcata |
18271084 |
T |
|
| Q |
101 |
caaatggacagattcatcattacttgcacatcacattactggcgagctgaattgtgctgcgaacattctgaattagttgaagtatatgtcagttcaacct |
200 |
Q |
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| T |
18271083 |
caaatggacagattcatcattacttgcacatcacattactggcgagctgaattgtgctgtgaacattctgaattagttgaagtatatgtcagttcaacct |
18270984 |
T |
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| Q |
201 |
gggatgcagtgctttctacagccagccaccattcttcttctc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18270983 |
gggatgcagtgctttctacagccagccaccattcttcatctc |
18270942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 18279009 - 18278869
Alignment:
| Q |
36 |
tgatcaaaaaagtagagagccacagaaactcctttcatc--tgagaccttatgaatagagtatcatacaaatggacagattcatcattacttgcacatca |
133 |
Q |
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||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| || || |
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| T |
18279009 |
tgatccaagaagtagagagccacagaaactcctttcatccatgagaccttatgagtagagtatcatacaaatggacagattcatcaatacttacaaggca |
18278910 |
T |
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| Q |
134 |
cattactggcgagctgaattgtgctgcgaacattctgaatt |
174 |
Q |
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| T |
18278909 |
cgttattggcgagctgaattgtgctgctaacattctgaatt |
18278869 |
T |
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