View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_high_3 (Length: 481)
Name: NF7753_high_3
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Original strand, 23860923 - 23861362
Alignment:
| Q |
17 |
ttaaaatggtacccagctggggggtagtttggagattggtagagaagcaggaaaaatccaacaaaacgacacaagagggattgagaatccaacgtgtagg |
116 |
Q |
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| T |
23860923 |
ttaaaatggtacccagctggggggtagtttggagattggtagagaagcaggaaaaatccaacaaaacgacacaagagggattgagaatccaacgtgtagg |
23861022 |
T |
|
| Q |
117 |
gtgggtgggtcctaagggagggattgaaaatcaaataaaaactcctctatttaattagtctcccataattatcggtccttgaaccacgtaaattgggtca |
216 |
Q |
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| T |
23861023 |
gtgggtgggtcctaagggagggattgaaaatcaaatcaaaactcctctatttaattagtctcccataattatcggtccttgaaccacgtaaattgggtca |
23861122 |
T |
|
| Q |
217 |
cactagacattccatattcttacaccaacctttccctctctttcggtatgaatatctcaaaccgtaaacatgcacagcaatgaagcttcatggttaaagt |
316 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23861123 |
cactagacattccatattctaacacgaacctttccctctctttcggtatgaatatctcaaaccgtaaacatgcacagcaatgaagcttcatggttaaagt |
23861222 |
T |
|
| Q |
317 |
caagactcaaacatgtttgttcacactttttggttttactac-aaacttgtgatttacgtgtgttccttcctaattctttctcatattagcatatacatc |
415 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23861223 |
caagactcaaacatgtttgttcacac-ttttggttttactacaaaaattgtgatttacgtgtgttccttcc---ttctttctcatattagcatatacatc |
23861318 |
T |
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| Q |
416 |
taagttttacactttacctattaggggtgttattccttaaccttgat |
462 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
23861319 |
taagttttacactttacctat---gggtgttattccttgaccttgat |
23861362 |
T |
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