View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_high_30 (Length: 246)
Name: NF7753_high_30
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 34815383 - 34815167
Alignment:
| Q |
11 |
agaatattaccctatttgaacctttccaagctgatgcggttccttacaatcggtttgagaggtttttgcttccaccatccttttgtataattgtgttctt |
110 |
Q |
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| T |
34815383 |
agaatattaccctatttgaacctttccaagctgatgcggttccttacaatcggtttgagaggtttttgcttccaccatccttttgtataattgtgttctt |
34815284 |
T |
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| Q |
111 |
ctttctagtagaatttttacttcatttagacattttaattttaaactttatgctaagtatatcagattttagatgcagttgtaaatattttcatgtgccc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34815283 |
ctttctagtagaatttttacttcatttagacattttaattttaaactttatgctaagtatatcagattttagatgcagttgtaaatattttcatgtgccc |
34815184 |
T |
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| Q |
211 |
tgctagcaggaccaatg |
227 |
Q |
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||||||||||||||||| |
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| T |
34815183 |
tgctagcaggaccaatg |
34815167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 35865607 - 35865398
Alignment:
| Q |
13 |
aatattaccctatttgaacctttccaagctgatgcggttccttacaatcggtttgagaggtttttgcttccaccatccttttgt--ataattgtgttctt |
110 |
Q |
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||||||||| || ||||| ||||||||||||||| ||||| |||||| | ||||||||||| |||| |||||||||| | | ||||| ||||||| |
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| T |
35865607 |
aatattaccttacctgaacgtttccaagctgatgcagttccacacaatcaatatgagaggttttggctttcaccatccttcttttgataatcatgttctt |
35865508 |
T |
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| Q |
111 |
ctttctagtagaatttttacttcatttagacattttaattttaaactttatgctaagtatatcagattttagatgcagttgtaaatattttcatgtgccc |
210 |
Q |
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|||||||| || |||| | |||||||||||||||||||| |||||||||| | |||||||| || |||||||||||||||| ||| |||||| || |
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| T |
35865507 |
ctttctagcagtatttct------tttagacattttaattttaagctttatgctatgaatatcagaattgagatgcagttgtaaat-tttccatgtgtcc |
35865415 |
T |
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| Q |
211 |
tgctagcaggaccaatg |
227 |
Q |
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|| |||||||| ||||| |
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| T |
35865414 |
tgttagcaggatcaatg |
35865398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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