View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_high_35 (Length: 229)
Name: NF7753_high_35
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_high_35 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 27414664 - 27414886
Alignment:
| Q |
7 |
tctacaaaatcaatcagccaatggaagcattttgatgagctgtgatagggcctagtgagggacaagggatcacatggtattgtcctatagaagtcatttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27414664 |
tctacaaaatcaatcagccaatggaagcattttgatgagctgtgatagggcctagtgagggacaagggatcacatggtattgtcctatagaagtcatttt |
27414763 |
T |
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| Q |
107 |
caaactattagatgaagctaaatggaagaacatgcacataccctactttgtaacacaactaaggaaaaattaaagacagtggattggtgaaagaaacttg |
206 |
Q |
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| T |
27414764 |
caaactattagatgaagctaaatggaagaacatgcacataccctactctgtaacacaactaaggaaaaattaaagacagtggattggtgaaagaaacttg |
27414863 |
T |
|
| Q |
207 |
atgtttgttgctatagctaatcc |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
27414864 |
atgtttgttgctatagctaatcc |
27414886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 27422319 - 27422527
Alignment:
| Q |
17 |
caatcagccaatggaagcattttgatgagctgtgatagggcctagtgagggacaagggatcacatggtattgtcctatagaagtcattttcaaactatta |
116 |
Q |
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|||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| || |||| |
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| T |
27422319 |
caattagccaatgaaagtattttgatgagctgtgatagggcctagtgagggacaagagatcacatggtattgtcttatagaagtcattttc-aaggatta |
27422417 |
T |
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| Q |
117 |
gatgaagctaaatggaagaacatgcacataccctactttgtaacacaactaaggaaaaattaaagacagtggattggtgaaagaaacttgatgtttgttg |
216 |
Q |
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| T |
27422418 |
gatgaagttaaatggaagaacatgcaaataccccactttgtaacaca---aaggaaaaattaaagacagtggattgatgaaagaaacctgatgttttctg |
27422514 |
T |
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| Q |
217 |
ctatagctaatcc |
229 |
Q |
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||||||||||||| |
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| T |
27422515 |
ctatagctaatcc |
27422527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 27424877 - 27425094
Alignment:
| Q |
7 |
tctacaaaatcaatcagccaatggaagcattttgatgagctgtgatagggcctagtgagggacaagggatcacatggtattgtcctat--------agaa |
98 |
Q |
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|||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
27424877 |
tctacaaaatcaattagccaatgaaagtattttggtgagctgtgatagggcctagtgacggacaagggatcacatggtattgtactattgtcttatagaa |
27424976 |
T |
|
| Q |
99 |
gtcattttcaa--actattagatgaagctaaatggaagaacatgcacataccctactttgtaacacaactaaggaaaaattaaagacagtggattggtga |
196 |
Q |
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| T |
27424977 |
gtcattttcaaggatta-tagatgaagttaaatggaagaacattcaaataccccactttgtaacacaactatggaaaaattaaagacagtggattggtga |
27425075 |
T |
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| Q |
197 |
aagaaacttgatgtttgtt |
215 |
Q |
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| T |
27425076 |
aagaaacctgatgtttgtt |
27425094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 27566994 - 27566860
Alignment:
| Q |
22 |
agccaatggaagcattttgatgagctgtgatagggcctagtgagggacaagggatcacatggtattgtcctatagaagtcattttcaaactattagatga |
121 |
Q |
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|||||||| ||| || |||||||||||||||||||||| |||||||| ||||||||||||| ||||| || |||||||||||||| | ||||||||| |
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| T |
27566994 |
agccaatgaaagtgttgtgatgagctgtgatagggcctactgagggaccagggatcacatggcattgtatcatggaagtcattttcaagc-attagatga |
27566896 |
T |
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| Q |
122 |
agctaaatggaagaacatgcacataccctactttgt |
157 |
Q |
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|| ||||||||||||||||||||||||| ||||||| |
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| T |
27566895 |
agataaatggaagaacatgcacataccccactttgt |
27566860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 27419489 - 27419547
Alignment:
| Q |
37 |
tttgatgagctgtgatagggcctagtgagggacaagggatcacatggtattgtcctata |
95 |
Q |
| |
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|||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |
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| T |
27419489 |
tttggtgagctgtgatagggtcaagtgaaggacaagggatcacatggtattgtcctata |
27419547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 27571321 - 27571228
Alignment:
| Q |
58 |
ctagtgagggacaagggatcacatggtattgtcctatagaagtcattttcaaactattagatgaagctaaatggaagaacatgcacataccctac |
152 |
Q |
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| T |
27571321 |
ctagttaggtacaagggttcacatggtattgtcttatagaggtcattttc-aaggattagatgaagctaaatataagaacatgcaaatactctac |
27571228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 27411831 - 27411879
Alignment:
| Q |
41 |
atgagctgtgatagggcctagtgagggacaagggatcacatggtattgt |
89 |
Q |
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||||||||||||| |||| |||||| |||| |||||||||||| ||||| |
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| T |
27411831 |
atgagctgtgatatggcccagtgagtgacatgggatcacatggaattgt |
27411879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 27411893 - 27411929
Alignment:
| Q |
120 |
gaagctaaatggaagaacatgcacataccctactttg |
156 |
Q |
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|||| |||||||||||| ||||||||||||||||||| |
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| T |
27411893 |
gaagataaatggaagaaaatgcacataccctactttg |
27411929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 27566836 - 27566780
Alignment:
| Q |
173 |
aaattaaagacagtggattggtgaaagaaacttgatgtttgttgctatagctaatcc |
229 |
Q |
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|||||||||||| || | ||||||||||||| || |||||||||||||||||||| |
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| T |
27566836 |
aaattaaagacaatgcaatggtgaaagaaacctggaatttgttgctatagctaatcc |
27566780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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