View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7753_high_4 (Length: 474)

Name: NF7753_high_4
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7753_high_4
NF7753_high_4
[»] chr3 (6 HSPs)
chr3 (291-454)||(9130884-9131047)
chr3 (291-437)||(9122794-9122940)
chr3 (1-192)||(9123100-9123289)
chr3 (1-192)||(9131207-9131396)
chr3 (242-292)||(9123039-9123089)
chr3 (242-292)||(9131146-9131196)
[»] chr4 (3 HSPs)
chr4 (307-454)||(24524738-24524885)
chr4 (4-159)||(24524997-24525154)
chr4 (204-254)||(24524921-24524967)
[»] chr7 (1 HSPs)
chr7 (344-454)||(10323190-10323301)
[»] chr5 (2 HSPs)
chr5 (1-56)||(9039041-9039096)
chr5 (1-39)||(39815112-39815150)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 291 - 454
Target Start/End: Complemental strand, 9131047 - 9130884
Alignment:
Q  291 ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9131047 ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt 9130948  T
Q  391 ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatga 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9130947 ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatga 9130884  T

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Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 291 - 437
Target Start/End: Complemental strand, 9122940 - 9122794
Alignment:
Q  291 ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122940 ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt 9122841  T
Q  391 ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgt 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9122840 ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgt 9122794  T

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Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9123289 - 9123100
Alignment:
Q  1 gaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatgtattataggaaggaactgtcatgtaag 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||| || ||| | ||||||||||| |||||||||    
T  9123289 gaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgattgtaatgtat-tatcaaaggaaggaact-tcatgtaag 9123192  T
Q  101 aaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattacttgtctggtttatttatcactgccaacgtct 192  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  9123191 aatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtctggtttctttattactgccaacgtct 9123100  T

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Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9131396 - 9131207
Alignment:
Q  1 gaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatgtattataggaaggaactgtcatgtaag 100  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||| || ||| | ||||||||||| |||||||||    
T  9131396 gaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgattgtaatgtat-tatcaaaggaaggaact-tcatgtaag 9131299  T
Q  101 aaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattacttgtctggtttatttatcactgccaacgtct 192  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  9131298 aatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtctggtttctttattactgccaacgtct 9131207  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 9123089 - 9123039
Alignment:
Q  242 attatcagttactcttgtagatattactgccaatgtctttatttgatgttt 292  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9123089 attatcagttactcttatagttattactgccaatgtctttatttgatgttt 9123039  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 9131196 - 9131146
Alignment:
Q  242 attatcagttactcttgtagatattactgccaatgtctttatttgatgttt 292  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9131196 attatcagttactcttatagttattactgccaatgtctttatttgatgttt 9131146  T

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Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 307 - 454
Target Start/End: Complemental strand, 24524885 - 24524738
Alignment:
Q  307 tttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga 406  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24524885 tttgtttttgcaactagaaaggttcattgctgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga 24524786  T
Q  407 aaagatcgtcaagaatttggctagagattgtgaggatattgtggatga 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24524785 aaagatcgtcaagaatttggctagagattgtgaggatattgtggatga 24524738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 24525154 - 24524997
Alignment:
Q  4 ggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatgtattat---aggaaggaactgtcatgtaag 100  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||| |||| |||  ||||||||||||||   ||||||||||| |||||||||    
T  24525154 ggagaaattatcattctcgattaattagctttttatctttaggaatgattgtagctaattacaatgcatgtattatcataggaaggaact-tcatgtaag 24525056  T
Q  101 aaattatattcatattcaatatatataatgaaattttatccactcattattcctcaatt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24525055 aaattatattcatattcaatatatataatgaaattttatccactcattattcctcaatt 24524997  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 24524967 - 24524921
Alignment:
Q  204 atatcaagtcactgcaactcatactatatagatggtcaattatcagttact 254  Q
    |||| ||||||||||||||||||    ||||||||||||||||||||||||    
T  24524967 atatgaagtcactgcaactcata----atagatggtcaattatcagttact 24524921  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 344 - 454
Target Start/End: Complemental strand, 10323301 - 10323190
Alignment:
Q  344 aaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatg-aaaagatcgtcaagaatttggctagagattgtgagga 442  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||  ||| ||| |||| |||||||||||||||||| ||||    
T  10323301 aaagaggggttattggttaatttggcactccgttattttggttctttggaaggctagaaatgcgaaaaatcatcaacaatttggctagagattgtaagga 10323202  T
Q  443 tattgtggatga 454  Q
    ||||||||||||    
T  10323201 tattgtggatga 10323190  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9039041 - 9039096
Alignment:
Q  1 gaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgca 56  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||| ||||    
T  9039041 gaaggagaaattatcattctcgattaattagttttttatctttaggaatgactgca 9039096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39815112 - 39815150
Alignment:
Q  1 gaaggagaaattatcattctcgattaattagctttttat 39  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  39815112 gaaggagaagttatcattctcgattaattagctttttat 39815150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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