View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7753_high_6 (Length: 453)
Name: NF7753_high_6
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 26566726 - 26567150
Alignment:
| Q |
17 |
aggtaatggaaatgaagtgtgtgaggagtgtgagtgttgtggggttgagttatggtgggtttgtggcgtatagtttaggtgttaagtataaagagtttgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26566726 |
aggtaatggaaatgaagtgtgtgaggagtgtgagtgttgtggggttgagttatggtgggtttgtggcatatagtttaggtgttaagtataaagagtttgt |
26566825 |
T |
|
| Q |
117 |
ggagaaggttgtgatttgtggatcaggtgtgagtttggaagagaaggatataaaagatggnnnnnnncctgtttctgatttggatgaagctgctaatatt |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26566826 |
ggagaaggttgtgatttgtggttcaggtgtgagtttggaagagaaggatataaaagatggtttttttcctgtttctgatttggatgaagctgctaatatt |
26566925 |
T |
|
| Q |
217 |
ttggtgccacaaactccacaaaagcttagggaactttttggatatgcnnnnnnncgaccacgtcgtttggcttggttgccctcttgcttcctccatgatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26566926 |
ttggtgccacaaactccacaaaagcttagggaactttttggatatgctttttttcgaccacgtcgtttggcttggttgccctcttgcttcctccatgatt |
26567025 |
T |
|
| Q |
317 |
tcattcatgtaagtttgtttcttatttataaatttcatgcaagtctttgattcttcttactgaatgtgataaaatcaagagttaaagtatatgtaaagcg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26567026 |
tcattcatgtaagtttgtttcttatttataaatttcatacaagtctttgattcttcttactgaatatgataaaatcaagagttaaagtatatgtaaagcg |
26567125 |
T |
|
| Q |
417 |
tatgtcaactgacaatgccgatatt |
441 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
26567126 |
taggtcaactgacaatgccgatatt |
26567150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University