View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_high_7 (Length: 415)
Name: NF7753_high_7
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 41846426 - 41846040
Alignment:
| Q |
18 |
ttttgacaggaagagctccttcctctcagtattcttctcccgtaggagttcgctcttgcgtggaatttgaagaacaagaagctgatcttccaaaatgggt |
117 |
Q |
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| T |
41846426 |
ttttgacaggaagagctccttcctctcagtattcttctccagtaggagttcgctcttgcgtggaatttgaagaacaagaagctgatcttccaaaatgggt |
41846327 |
T |
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| Q |
118 |
tcggtctgttgtgaaggatgagtggacatcagaggtgtttgatcaagaacttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgtt |
217 |
Q |
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| T |
41846326 |
tcggtctgttgtgaaggatgagtggacatcagaggtgtttgatcaagaacttttgaggtacaagaacattgaggaggagcttgtttcaatgctgaatgtt |
41846227 |
T |
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| Q |
218 |
ggactagcttgtgttgcgttacaacctgagaaaaggccaacaatgttggatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagag |
317 |
Q |
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| T |
41846226 |
ggactagcttgtgttgcgttacaacctgagaaaaggccaacaatgttggatgttgttaagatgatcgaggatattagggtggaacaatctcctctaagag |
41846127 |
T |
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| Q |
318 |
aggattatgatgaatctcgcaattcactttcaccttcacttgccacgactgaagattgcttagcttaatagcactagtgttattcat |
404 |
Q |
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| T |
41846126 |
aggattatgatgaatctcgcgattcactttcaccttcacttgccacgactgaagattgcttagcttaatagcactagtgttattcat |
41846040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 101 - 373
Target Start/End: Original strand, 26890655 - 26890927
Alignment:
| Q |
101 |
gatcttccaaaatgggttcggtctgttgtgaaggatgagtggacatcagaggtgtttgatcaagaacttttgaggtacaagaacattgaggaggagcttg |
200 |
Q |
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| T |
26890655 |
gatcttcccaaatgggttcgatcagtcgtgagagaagagtggactggggaggtttttgatcaagaacttctgcgatacaagaacattgaggaagagcttg |
26890754 |
T |
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| Q |
201 |
tttcaatgctgaatgttggactagcttgtgttgcgttacaacctgagaaaaggccaacaatgttggatgttgttaagatgatcgaggatattagggtgga |
300 |
Q |
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| T |
26890755 |
tgtcaatgctgcatgttgggttggcttgtgtggtgcagcagccagagaagaggccaactatggtagatgttgttaaaatgattgaggatatcagagtgga |
26890854 |
T |
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| Q |
301 |
acaatctcctctaagagaggattatgatgaatctcgcaattcactttcaccttcacttgccacgactgaagat |
373 |
Q |
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| T |
26890855 |
gcaatctcctctgtgtgaggactatgacgaatcacgcaattcgctttcaccttccattcccaccactgaagat |
26890927 |
T |
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