View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_1 (Length: 780)
Name: NF7753_low_1
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 23747548 - 23747893
Alignment:
| Q |
18 |
aacctctcatgaactgaatattttcagcacttttctttttaattcctttctagacgttaaactaaaccattatgtgtttgactcagcgttagcaaacttg |
117 |
Q |
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| T |
23747548 |
aacctctcatgaactgaatattttcagcacttttctttttaactcctttctagacgttaaactaaaccattatgtgtttggctcagcgttagcaaacttg |
23747647 |
T |
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| Q |
118 |
attttagatgaacttgattttcaaaattgattttagttgaaagtgaatatagattggagtgagtggtccatgttcaaaaacttttatttcaaaattagtt |
217 |
Q |
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| T |
23747648 |
attttagatgaactttattttcaaaattgattttagttgaaagtgaatatagattggagtgagtggtccatgtttgaaaacttttatttcaaaattagtt |
23747747 |
T |
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| Q |
218 |
aaaagtctgaaaatttcaactcagtgcaaaaactacatttttaacaatcaatgtagggatgcatcaactaaatattcacacaggcccccgggaaggagtt |
317 |
Q |
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| T |
23747748 |
aaaagtctgaaaatttcaactaagtgcaaaaactacatttttaacaatcaatgtagggatgcatcaactaaatattcacacaggcccccgggaactag-t |
23747846 |
T |
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| Q |
318 |
attaagaaggatgttcagggttgcatccttgctgctaacgattttcc |
364 |
Q |
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| T |
23747847 |
attaagaaggatgttcagggttgcatccttgctgcaaacaattttcc |
23747893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 415 - 766
Target Start/End: Original strand, 23747934 - 23748274
Alignment:
| Q |
415 |
ctaaatatacacacaatgtacgatacgtataataataacaataataacgtaagtgtacaaaatcacaactacagggcatcgtgtaccttacaaccactta |
514 |
Q |
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| T |
23747934 |
ctaaatatacacacaatgtatgatatgtgtaatgataa------taacctaagcgtacaaaatcacaactac--ggcatcgtgtaccttacaaccactta |
23748025 |
T |
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| Q |
515 |
tattcaaatcaacaatgtgtttacagttcctcactgtatgtagtagtccagtatcagttaccctgaaataagagtcatatttcagtattgttactaagga |
614 |
Q |
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| T |
23748026 |
tattcaaatcaacaatgtgtttgcagttcctcgctgtatgtagtagtccagtatcagttaccctgaaataagagtcata-ttcagtattgttgctaagga |
23748124 |
T |
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| Q |
615 |
ttgacttgtaaatccaaagtaagattttcaaatgctaaatcaaacatggcacattaagaaatttttcaaagtacctcacgttccagtagacggaaaatgt |
714 |
Q |
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| T |
23748125 |
ttgacttttaaatccaaagtgagattttcaaatgctaaatcaaacacgggtcattaagaa--ttttcaaagtacctcacgttccagtagacggaaaatgt |
23748222 |
T |
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| Q |
715 |
ttttagctgaggacaacaactggttattgcttcaattcctgtatccgatatt |
766 |
Q |
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| T |
23748223 |
ttttagctgaggacaacaactagttattgcttcaattcctgtatccgatatt |
23748274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 538 - 752
Target Start/End: Original strand, 23687119 - 23687333
Alignment:
| Q |
538 |
cagttcctcactgtatgtagtagtccagtatcagttaccctgaaataagagtcatatttcagtattgttactaaggattgacttgtaaatccaaagtaag |
637 |
Q |
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| T |
23687119 |
cagttcctcactgtatgaagtagtcgattatcagttatcctgtaataggactcatatttcagtattgttgctaaggattaacttttaaatccaaagtgag |
23687218 |
T |
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| Q |
638 |
attttcaaatgctaaatcaaacatggcacattaagaaatttttcaaagtacctcacgttccagtagacggaaaatgtttttagctgaggacaacaactgg |
737 |
Q |
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| T |
23687219 |
gttttcaactgcaaaatcaaacattgcacatttagaaaaaattgaatgcacctcacattccagtagatggaacaggtttctagctgaggacaacaactgg |
23687318 |
T |
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| Q |
738 |
ttattgcttcaattc |
752 |
Q |
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| T |
23687319 |
ttattgcttcaattc |
23687333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 23679343 - 23679444
Alignment:
| Q |
105 |
gttagcaaacttgattttagatgaacttgattttcaaaattgattttagttgaaagtgaatatagat-tggagtgagtggtccatgttcaaaaactttta |
203 |
Q |
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| T |
23679343 |
gttagcaaactttattttaaatgaatttgattttcgaaattgatttcagttgaaactgagtat-gatgtggagtgagtgattcatgtttgaaaactttta |
23679441 |
T |
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| Q |
204 |
ttt |
206 |
Q |
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| T |
23679442 |
ttt |
23679444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 695 - 750
Target Start/End: Complemental strand, 23743287 - 23743232
Alignment:
| Q |
695 |
ttccagtagacggaaaatgtttttagctgaggacaacaactggttattgcttcaat |
750 |
Q |
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| T |
23743287 |
ttccagtagatggaaaaggtttatagctgagaacaacaactggttattgcttcaat |
23743232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 699 - 752
Target Start/End: Original strand, 23721338 - 23721392
Alignment:
| Q |
699 |
agtagacggaaaatgtttt-tagctgaggacaacaactggttattgcttcaattc |
752 |
Q |
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| T |
23721338 |
agtagatggaaaaagttttctagctgaggacaacaattggttattgcttcaattc |
23721392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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