View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7753_low_11 (Length: 396)

Name: NF7753_low_11
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7753_low_11
NF7753_low_11
[»] chr6 (41 HSPs)
chr6 (18-215)||(26056078-26056275)
chr6 (18-215)||(26076048-26076245)
chr6 (18-217)||(25579871-25580070)
chr6 (18-217)||(26143017-26143216)
chr6 (18-217)||(25538692-25538891)
chr6 (18-217)||(25481894-25482093)
chr6 (25-204)||(26646638-26646817)
chr6 (25-204)||(26752606-26752785)
chr6 (25-202)||(27337916-27338093)
chr6 (25-202)||(27398656-27398833)
chr6 (25-202)||(26656148-26656325)
chr6 (25-202)||(26762119-26762296)
chr6 (18-106)||(26048997-26049085)
chr6 (18-106)||(26070166-26070254)
chr6 (25-202)||(26823999-26824176)
chr6 (95-204)||(27214649-27214758)
chr6 (95-204)||(27234470-27234579)
chr6 (61-182)||(26848855-26848976)
chr6 (99-204)||(28786511-28786616)
chr6 (99-204)||(28792632-28792737)
chr6 (100-204)||(28781373-28781477)
chr6 (26-140)||(26949821-26949935)
chr6 (76-185)||(25506852-25506961)
chr6 (43-214)||(27718218-27718389)
chr6 (95-182)||(26975281-26975368)
chr6 (110-196)||(26617866-26617952)
chr6 (110-196)||(26723794-26723880)
chr6 (95-182)||(25071888-25071975)
chr6 (95-182)||(26959395-26959482)
chr6 (43-125)||(28098297-28098379)
chr6 (150-215)||(27679230-27679295)
chr6 (159-215)||(27677452-27677508)
chr6 (159-215)||(27706240-27706296)
chr6 (149-189)||(28098221-28098261)
chr6 (172-215)||(27592858-27592901)
chr6 (25-83)||(26623135-26623193)
chr6 (25-83)||(26729113-26729171)
chr6 (76-137)||(24715795-24715856)
chr6 (158-215)||(26802734-26802791)
chr6 (111-196)||(26811754-26811839)
chr6 (32-84)||(29826193-29826245)
[»] chr1 (3 HSPs)
chr1 (25-202)||(268195-268372)
chr1 (73-203)||(28127516-28127646)
chr1 (73-203)||(28164200-28164330)
[»] chr4 (5 HSPs)
chr4 (25-202)||(18731342-18731519)
chr4 (25-201)||(18699239-18699415)
chr4 (25-204)||(18723921-18724100)
chr4 (31-204)||(18655313-18655486)
chr4 (25-204)||(18679403-18679582)
[»] chr8 (1 HSPs)
chr8 (25-202)||(29273621-29273798)
[»] scaffold0419 (1 HSPs)
scaffold0419 (100-202)||(7759-7861)
[»] scaffold0277 (2 HSPs)
scaffold0277 (100-202)||(13483-13585)
scaffold0277 (98-202)||(4522-4626)
[»] chr2 (3 HSPs)
chr2 (61-182)||(17993555-17993676)
chr2 (149-189)||(3279986-3280026)
chr2 (32-83)||(3279857-3279908)
[»] scaffold0349 (2 HSPs)
scaffold0349 (158-214)||(3259-3315)
scaffold0349 (159-214)||(14195-14250)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 7e-96; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 26056078 - 26056275
Alignment:
Q  18 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26056078 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcataaagaggggttccaa 26056177  T
Q  118 aataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccc 215  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  26056178 aataacgagaaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaacttgtccggctatcattatagtcctcatgagtaccc 26056275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 26076048 - 26076245
Alignment:
Q  18 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26076048 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcataaagaggggttccaa 26076147  T
Q  118 aataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccc 215  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  26076148 aataacgagaaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaacttgtccggctatcattatagtcctcatgagtaccc 26076245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 25579871 - 25580070
Alignment:
Q  18 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||    
T  25579871 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagtatcttactaagcatgaagagaggtttcaa 25579970  T
Q  118 aataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacccca 217  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25579971 aataacgagaaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacccca 25580070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 26143017 - 26143216
Alignment:
Q  18 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaa 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |||    
T  26143017 cttagtatttcccgttttctatgatgtggaacctactcacatacgaaatcagagtgggatttatggtgagcatcttactaagcatgaagagaggtttcaa 26143116  T
Q  118 aataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacccca 217  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26143117 aataacgagaaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcattatagtcctcatgggtacccca 26143216  T

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Target: chr6; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 25538692 - 25538891
Alignment:
Q  18 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaa 117  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||    
T  25538692 cttagtattgcccgttttctatgatgtggaacctactcagttacgacatcagagtgggagttatggtgagcattttactaagcatgaagagaggtttcaa 25538791  T
Q  118 aataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacccca 217  Q
    |||||  ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25538792 aataatgagaaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcattatagtcctcatgggtacccca 25538891  T

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Target: chr6; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 25481894 - 25482093
Alignment:
Q  18 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaa 117  Q
    ||||||||| ||||||||||||| |||||| |||||| |  | |||| ||| |   | |||||||||||  |||| ||||||||||||||||||||||||    
T  25481894 cttagtattacccgttttctatggtgtggatcctactgatgttcgacgtcatacatgtagttatggtgaatatctgactaagcatgaagaggggttccaa 25481993  T
Q  118 aataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacccca 217  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  25481994 aataacgagaaaaacatggagcgattgcgtcaatggaagatggctcttactcaagctgctaatttgtccggctatcattatagtcctcatgagtacccca 25482093  T

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Target: chr6; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 26646638 - 26646817
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||||||||||||||  ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| |||||| | |||||||||||||    
T  26646638 ttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggtgaacatctcactaagcacgaagagagtttccaaaataaca 26646737  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcct 204  Q
    ||||||||| ||| ||| ||| |||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  26646738 agaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcct 26646817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 26752606 - 26752785
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||||||||||||||  ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| |||||| | |||||||||||||    
T  26752606 ttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggtgaacatctcactaagcacgaagagagtttccaaaataaca 26752705  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcct 204  Q
    ||||||||| ||| ||| ||| |||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||    
T  26752706 agaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcct 26752785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 27338093 - 27337916
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||| |||||||||| || ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  27338093 ttgcctgttttctatggtgcggatcctactcacgtacgacatcagactgggagttatggtgagcatcttactaagcatgaagataagttccaaaataaca 27337994  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtc 202  Q
    || ||||||||||| |  ||    |||||||||||||||||||||||||||||||||| |||||| | |||| |||||    
T  27337993 aggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccattttagtc 27337916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 27398833 - 27398656
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||| |||||||||| || ||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  27398833 ttgcctgttttctatggtgcggatcctactcacgtacgacatcagactgggagttatggtgagcatcttactaagcatgaagataagttccaaaataaca 27398734  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtc 202  Q
    || ||||||||||| |  ||    |||||||||||||||||||||||||||||||||| |||||| | |||| |||||    
T  27398733 aggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccattttagtc 27398656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 26656148 - 26656325
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||  ||||||||||||||    
T  26656148 ttgcctgttttctatggtgtggatcctactcacatacgacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataaca 26656247  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtc 202  Q
    || |||||||| || |  ||   ||||||||||||||||| ||| ||||||| |||||||| ||||| |||| |||||    
T  26656248 aggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgtagtc 26656325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 26762119 - 26762296
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||  ||||||||||||||    
T  26762119 ttgcctgttttctatggtgtggatcctactcacatacgacatcagactggaagttacggtgagcatcttactaagcatgaaaagaagttccaaaataaca 26762218  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtc 202  Q
    || |||||||| || |  ||   ||||||||||||||||| ||| ||||||| |||||||| ||||| |||| |||||    
T  26762219 aggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccattgtagtc 26762296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 26048997 - 26049085
Alignment:
Q  18 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaag 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  26048997 cttagtattgcccgttttttatgatgtggaacctactcacatacgacatcatagtggaagttatggtgagcatcttactaagcatgaag 26049085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 26070166 - 26070254
Alignment:
Q  18 cttagtattgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaag 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  26070166 cttagtattgcccgttttttatgatgtggaacctactcacatacgacatcatagtggaagttatggtgagcatcttactaagcatgaag 26070254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 26823999 - 26824176
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||| |||||||||| |||||| |||  | |||||||||||||| |||||||||||| |   ||||| |||||||||||| || |||||  ||||||||    
T  26823999 ttgcctgttttctatggtgtggatcctggtgacatacgacatcagcgtgggagttatgctatacatctcactaagcatgaaaagaggttcggaaataaca 26824098  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtc 202  Q
    || |||||||||||  | ||| ||||||||||| |||||| |  ||||||||| ||||||| |||| ||||| |||||    
T  26824099 aggaaaacatggagaaattgcttcaatggaagaaggctctgaaacaagctgctgacttgtctggctttcattttagtc 26824176  T

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Target: chr6; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 27214649 - 27214758
Alignment:
Q  95 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatca 194  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||  |||   |||||||||| ||||||| ||||||||||||||| || ||||||||    
T  27214649 ctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatca 27214748  T
Q  195 ttatagtcct 204  Q
    ||||||||||    
T  27214749 ttatagtcct 27214758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 95 - 204
Target Start/End: Complemental strand, 27234579 - 27234470
Alignment:
Q  95 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatca 194  Q
    |||||||||||||| |||| |||||||||||| |||||||||||||  |||   |||||||||| ||||||| ||||||||||||||| || ||||||||    
T  27234579 ctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatca 27234480  T
Q  195 ttatagtcct 204  Q
    ||||||||||    
T  27234479 ttatagtcct 27234470  T

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Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 26848855 - 26848976
Alignment:
Q  61 cgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatg 159  Q
    |||||||||| | | ||||||||||| ||| ||| ||||||||||||||| ||| |||||||||||| ||| |||||||||  ||||| |||||||||      
T  26848855 cgacatcagaatagtagttatggtgaagca-cttgctaagcatgaagaggtgtttcaaaataacaaggaaagcatggagcgtttgcgtaaatggaagaaa 26848953  T
Q  160 gctcttacccaagctgctaactt 182  Q
    ||||||| ||| |||||||||||    
T  26848954 gctcttaaccatgctgctaactt 26848976  T

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Target: chr6; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 28786511 - 28786616
Alignment:
Q  99 gcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattat 198  Q
    ||||||| || |||| |||||| | ||| | ||||||||| |  ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||| |    
T  28786511 gcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattct 28786610  T
Q  199 agtcct 204  Q
    ||||||    
T  28786611 agtcct 28786616  T

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Target: chr6; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 28792632 - 28792737
Alignment:
Q  99 gcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattat 198  Q
    ||||||| || |||| |||||| | ||| | ||||||||| |  ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||| |    
T  28792632 gcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattct 28792731  T
Q  199 agtcct 204  Q
    ||||||    
T  28792732 agtcct 28792737  T

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Target: chr6; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 28781373 - 28781477
Alignment:
Q  100 catgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattata 199  Q
    |||||| || |||| |||||| | ||| | ||||||||| |  ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||| ||    
T  28781373 catgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattcta 28781472  T
Q  200 gtcct 204  Q
    |||||    
T  28781473 gtcct 28781477  T

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Target: chr6; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 26949821 - 26949935
Alignment:
Q  26 tgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    |||| |||||||||||||| |||||| ||||| | |||||||||| |   ||||||||||| ||| ||| |||||||||||||| |||||||||| | ||    
T  26949821 tgccagttttctatgatgtagaaccttctcacgtgcgacatcagaattatagttatggtgaagca-cttgctaagcatgaagagaggttccaaaagagca 26949919  T
Q  125 agaaaaacatggagcg 140  Q
    | ||||||||||||||    
T  26949920 aaaaaaacatggagcg 26949935  T

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Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 25506961 - 25506852
Alignment:
Q  76 agttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctg 175  Q
    |||||||||||  |||| |||||||||||||||  ||| |||||||| ||||||||||||||| ||  || ||||||||| || ||||| || ||| |||    
T  25506961 agttatggtgaagatctgactaagcatgaagagaagtttcaaaataataagaaaaacatggagagatcgcatcaatggaaaatagctctaacacaatctg 25506862  T
Q  176 ctaacttgtc 185  Q
    ||||| ||||    
T  25506861 ctaacctgtc 25506852  T

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Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 27718389 - 27718218
Alignment:
Q  43 gtggaacctactcacatacgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcga 141  Q
    |||||||||||| || | ||||||||||  || ||||||||||| |||| |  || |||||||| || |||| |||||| | ||||| ||||||||| |     
T  27718389 gtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcat-tggctgagcatgaaaagaggtttcaaaatgataagaataacatggagagg 27718291  T
Q  142 gtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacc 214  Q
     |||  | ||||||  ||||||| | ||| |||||||||||||||||||| ||| ||||||||| ||||||||    
T  27718290 ttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 27718218  T

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Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 26975281 - 26975368
Alignment:
Q  95 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaactt 182  Q
    ||||||||||||||||||| |||||||| ||  ||||| |||||||  ||| | |||||||||  ||||||| |||||||||||||||    
T  26975281 ctaagcatgaagaggggtttcaaaataaaaatgaaaacttggagcggttgcttaaatggaagaaagctcttaaccaagctgctaactt 26975368  T

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Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 26617866 - 26617952
Alignment:
Q  110 ggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcatt 196  Q
    ||||||||||||||||| |||||||||||||  |||   |||||||||| ||||||| |||||||  |||||| || ||||||||||    
T  26617866 ggttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggctatcatt 26617952  T

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Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 26723794 - 26723880
Alignment:
Q  110 ggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcatt 196  Q
    ||||||||||||||||| |||||||||||||  |||   |||||||||| ||||||| |||||||  |||||| || ||||||||||    
T  26723794 ggttccaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagcttataacttatctggctatcatt 26723880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 25071888 - 25071975
Alignment:
Q  95 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaactt 182  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||  |||    ||||||||  ||||||| | |||||||||||||    
T  25071888 ctaagcatgaagaggggtttcaaaataacaaggaacacatggagcggttgctgacatggaagaaagctcttaacgaagctgctaactt 25071975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 26959395 - 26959482
Alignment:
Q  95 ctaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaactt 182  Q
    ||||||||||||||  ||| ||||||| |||| |||||||||||||  |||   |||||||||  ||||||| |||||||||||||||    
T  26959395 ctaagcatgaagagcagtttcaaaatagcaaggaaaacatggagcggttgctgaaatggaagaaagctcttaaccaagctgctaactt 26959482  T

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Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 28098379 - 28098297
Alignment:
Q  43 gtggaacctactcacatacgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataacaa 125  Q
    ||||||||| ||||| | ||||||||||  |||||||||||||| |||| |  |||||||||||||| ||||||||||||||||    
T  28098379 gtggaaccttctcacgtgcgacatcagacggggagttatggtgaagcat-tagctaagcatgaagagaggttccaaaataacaa 28098297  T

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Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 27679230 - 27679295
Alignment:
Q  150 atggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccc 215  Q
    |||||| | |||||| | ||| |||||||||||||||||||| ||| ||||||||| |||||||||    
T  27679230 atggaaaaaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtaccc 27679295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 27677508 - 27677452
Alignment:
Q  159 ggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccc 215  Q
    |||||| | ||| |||||||||||||||||||| ||| ||||||||| |||||||||    
T  27677508 ggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtaccc 27677452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 27706296 - 27706240
Alignment:
Q  159 ggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccc 215  Q
    |||||| | ||| |||||||||||||||||||| ||| ||||||||| |||||||||    
T  27706296 ggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtaccc 27706240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 28098261 - 28098221
Alignment:
Q  149 aatggaagatggctcttacccaagctgctaacttgtccggc 189  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  28098261 aatggaagatggctcttaaccaagcagctaacttgtccggc 28098221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 27592901 - 27592858
Alignment:
Q  172 gctgctaacttgtccggctatcattatagtcctcatgggtaccc 215  Q
    |||||||||||||||||||| ||| ||||||||| |||||||||    
T  27592901 gctgctaacttgtccggctaccatgatagtcctcctgggtaccc 27592858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 26623135 - 26623193
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatgg 83  Q
    |||||||| |||||||  ||||| |||||||||||||| ||||| | ||||||||||||    
T  26623135 ttgcccgtcttctatggcgtggatcctactcacatacggcatcaaactgggagttatgg 26623193  T

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Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 26729113 - 26729171
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatgg 83  Q
    |||||||| |||||||  ||||| |||||||||||||| ||||| | ||||||||||||    
T  26729113 ttgcccgtcttctatggcgtggatcctactcacatacggcatcaaactgggagttatgg 26729171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 24715795 - 24715856
Alignment:
Q  76 agttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatgga 137  Q
    |||||||||||   |||| ||||||||||||| ||||| |||||||||||| || |||||||    
T  24715795 agttatggtgaagctcttgctaagcatgaagacgggtttcaaaataacaaggaacacatgga 24715856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 26802734 - 26802791
Alignment:
Q  158 tggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtaccc 215  Q
    ||||||| | ||| |||||||||||||||||||| ||| ||||||||| | |||||||    
T  26802734 tggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctcggtaccc 26802791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 26811754 - 26811839
Alignment:
Q  111 gttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcatt 196  Q
    |||||||||||||||| |||||||||| ||  |||   |||||||||| ||||||| ||||| || |||||| || |||| |||||    
T  26811754 gttccaaaataacaaggaaaacatggatcggttgcagaaatggaagatagctcttaaccaagttggtaacttatctggctttcatt 26811839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 29826193 - 29826245
Alignment:
Q  32 ttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggt 84  Q
    |||||||||||||||| ||| ||||  | |||||||||| |||||||||||||    
T  29826193 ttttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 29826245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 268372 - 268195
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    |||||||| |||||||  ||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||| | |||||||||| ||    
T  268372 ttgcccgtcttctatggcgtggatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacgaagagagtttccaaaatagca 268273  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtc 202  Q
    ||||||||||||||||  ||| |||||||||| ||||||| ||||||||| |||||||||| ||||| |||| |||||    
T  268272 agaaaaacatggagcggttgcatcaatggaagttggctctgacccaagcttctaacttgtctggctaccattctagtc 268195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 28127646 - 28127516
Alignment:
Q  73 gggagttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaag 172  Q
    ||||||||||||||  | ||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||  ||||||||||| ||||| |||||||    
T  28127646 gggagttatggtgaagagcttgctaagcatggagagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaag 28127547  T
Q  173 ctgctaacttgtccggctatcattatagtcc 203  Q
    ||||||||||||||||||| |||||||||||    
T  28127546 ctgctaacttgtccggctaccattatagtcc 28127516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 28164330 - 28164200
Alignment:
Q  73 gggagttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaag 172  Q
    |||||||||||  |  |||||||||||||||  ||| |||||||||||||||||||||||||||||||| |||  ||||||||||| ||||| |||||||    
T  28164330 gggagttatggcaaagatcttactaagcatggtgagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaag 28164231  T
Q  173 ctgctaacttgtccggctatcattatagtcc 203  Q
    ||||||||||||||||||| |||||||||||    
T  28164230 ctgctaacttgtccggctaccattatagtcc 28164200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 18731519 - 18731342
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||| ||||||||||  ||||| |||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||  || || | |||||||||||||    
T  18731519 ttgcctgttttctatggcgtggatcctagtcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacaaaaagagtttccaaaataaca 18731420  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtc 202  Q
    ||||||||||||||||  ||| |||||||||| ||||||| ||| |||||||||||||||||||||| |||| |||||    
T  18731419 agaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtc 18731342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 18699415 - 18699239
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||| ||||||||||  || || |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | | || | |||||||||||||    
T  18699415 ttgcctgttttctatggcgtagatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagcacggaaagagtttccaaaataaca 18699316  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagt 201  Q
    ||||||||||||||||  ||| |||||||||| | ||||| ||| |||||||||||||||||||||| |||| ||||    
T  18699315 agaaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccattttagt 18699239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 18724100 - 18723921
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||| ||||||||||  ||||| |||| |||||||||||| || ||||||||||||||||| ||||| ||||||||  ||  | | |||||||||||||    
T  18724100 ttgcctgttttctatggcgtggatcctagtcacatacgacaccaaagtgggagttatggtgaacatctcactaagcacaaaatgagtttccaaaataaca 18724001  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcct 204  Q
    ||||||||||||||||  ||| |||||||||| ||||||| ||| |||||||||||||||||||||| |||| |||||||    
T  18724000 agaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcct 18723921  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 18655486 - 18655313
Alignment:
Q  31 gttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataacaagaaaa 130  Q
    ||||||||||  ||||| |||||||||||||||||||| | ||| ||||||||||| ||||| ||||||||   | ||   |||||||||||||||||||    
T  18655486 gttttctatggcgtggatcctactcacatacgacatcaaactggaagttatggtgaacatctcactaagcacagaaagaatttccaaaataacaagaaaa 18655387  T
Q  131 acatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcct 204  Q
    ||||||||||  ||| |||||||||| ||||||| ||| |||||||||||||||||||||| |||| |||||||    
T  18655386 acatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattctagtcct 18655313  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 18679582 - 18679403
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagca-tgaagaggggttccaaaataac 123  Q
    ||||| ||||||||||  ||||| |||||||||||| ||||||| ||||| ||||||||||| ||||| ||||| || |||| || | ||||||||||||    
T  18679582 ttgcctgttttctatgtcgtggatcctactcacatatgacatcaaagtggtagttatggtgaacatctcactaatcactgaa-agagtttccaaaataac 18679484  T
Q  124 aagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtcct 204  Q
    || ||||||||||||||  ||| |||||||||| | ||||| ||| |||||||||||||||||||||| |||| |||||||    
T  18679483 aataaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccattttagtcct 18679403  T

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Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 29273798 - 29273621
Alignment:
Q  25 ttgcccgttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggtgagcatcttactaagcatgaagaggggttccaaaataaca 124  Q
    ||||| || |||||||  ||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||| | |||||| | |||||||||| ||    
T  29273798 ttgcctgtcttctatggcgtggatcctactcacatacgacatcaaagtgggagttatggtgaacatctcactaagtacgaagagagtttccaaaatagca 29273699  T
Q  125 agaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattatagtc 202  Q
    ||||||||||||| ||  ||| |||||||||| ||||||| ||||||||| |||||||||| ||||| |||| |||||    
T  29273698 agaaaaacatggatcggttgcatcaatggaagttggctctgacccaagcttctaacttgtctggctaccattctagtc 29273621  T

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Target: scaffold0419 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 7759 - 7861
Alignment:
Q  100 catgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattata 199  Q
    |||||| || |||| |||||| | ||||| |||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||| ||    
T  7759 catgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattcta 7858  T
Q  200 gtc 202  Q
    |||    
T  7859 gtc 7861  T

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Target: scaffold0277 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 13585 - 13483
Alignment:
Q  100 catgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcattata 199  Q
    |||||| || |||| |||||| | ||||| |||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||| |||| ||    
T  13585 catgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattcta 13486  T
Q  200 gtc 202  Q
    |||    
T  13485 gtc 13483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 4626 - 4522
Alignment:
Q  98 agcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatggctcttacccaagctgctaacttgtccggctatcatta 197  Q
    |||||||| || |||| |||||| | ||||| ||||||||| |  ||| |||||||||| ||||||| |||||||||||||||||||||||||| ||||     
T  4626 agcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattc 4527  T
Q  198 tagtc 202  Q
    |||||    
T  4526 tagtc 4522  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 17993676 - 17993555
Alignment:
Q  61 cgacatcagagtgggagttatggtga-gcatcttactaagcatgaagaggggttccaaaataacaagaaaaacatggagcgagtgcgtcaatggaagatg 159  Q
    |||||||||| ||  ||||||||||| ||| ||| |||||||||||||||| || ||||||| |||| |||||||||||||  ||    |||||||||      
T  17993676 cgacatcagaatgatagttatggtgaagca-cttgctaagcatgaagagggttttcaaaatagcaaggaaaacatggagcggttgttgaaatggaagaaa 17993578  T
Q  160 gctcttacccaagctgctaactt 182  Q
    ||||||| |||||||||||||||    
T  17993577 gctcttaaccaagctgctaactt 17993555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 3279986 - 3280026
Alignment:
Q  149 aatggaagatggctcttacccaagctgctaacttgtccggc 189  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  3279986 aatggaagatggctcttaaccaagcagctaacttgtccggc 3280026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 3279857 - 3279908
Alignment:
Q  32 ttttctatgatgtggaacctactcacatacgacatcagagtgggagttatgg 83  Q
    |||||||||||||||||||| | ||| | |||||||||| ||||||||||||    
T  3279857 ttttctatgatgtggaaccttcccacgtgcgacatcagactgggagttatgg 3279908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 3315 - 3259
Alignment:
Q  158 tggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacc 214  Q
    ||||||| | ||| |||||||||||||||||||| ||| ||||||||| ||||||||    
T  3315 tggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 3259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 14250 - 14195
Alignment:
Q  159 ggctcttacccaagctgctaacttgtccggctatcattatagtcctcatgggtacc 214  Q
    |||||| | ||| |||||||||||||||||||| ||| ||||||||| ||||||||    
T  14250 ggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 14195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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