View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_15 (Length: 354)
Name: NF7753_low_15
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 33622119 - 33622438
Alignment:
| Q |
18 |
aagaaattaggaattctagagttataaaatcacggtgatattgctttgagacacgagaaaaaagagagaaacatggaaacac--acacttaacaacgtaa |
115 |
Q |
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| T |
33622119 |
aagaagttaggaattctagagttatgaaatcacggtgatattgctctgagacacgagaaaaaagagagaaacatggaaacacacacacttaacaacgtaa |
33622218 |
T |
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| Q |
116 |
tttgacatgttgaacaatcttttactagtaataacggtaggtttggtattgcagcaaagatgaatggatgtttagaatcacggtagattgaacaaaatga |
215 |
Q |
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| T |
33622219 |
tttgacatgttgaacaatcttttactagtaataacggtaggtttggtattgcagcaaagatgaatggatgtttagaatcacggtagattgaacaaaatga |
33622318 |
T |
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| Q |
216 |
caccgtaatttttgcttaacgcaacctgatatatcaaacaaacacacatcacgtaactcagacaaattcaatgtaatacaagagacaccgttagtgaaaa |
315 |
Q |
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| T |
33622319 |
caccgtaatttttgcttaacgcaacctgatatatcaaacaaacacacatcacataactcagacatattcaatgtaatacaagagacaccgttagtgaaaa |
33622418 |
T |
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| Q |
316 |
cctgttcaatcgaagttact |
335 |
Q |
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| T |
33622419 |
cctgttcaatcgaagttact |
33622438 |
T |
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Back To:
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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 41318826 - 41318750
Alignment:
| Q |
27 |
ggaattctagagttataaaatcacggtgatattgctttgagacacgagaaaaaagagagaaacatggaaacacacac |
103 |
Q |
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|||||||||||||| ||||||||| | ||||||||||| | | ||||||||||||||||| || ||||| |||| |
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| T |
41318826 |
ggaattctagagttttaaaatcacagcaatattgctttggggcgtaagaaaaaagagagaaacgtgaaaacaaacac |
41318750 |
T |
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