View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7753_low_16 (Length: 349)

Name: NF7753_low_16
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7753_low_16
NF7753_low_16
[»] chr4 (8 HSPs)
chr4 (159-341)||(43435540-43435722)
chr4 (159-341)||(43443734-43443916)
chr4 (23-162)||(43435752-43435891)
chr4 (23-162)||(43443946-43444085)
chr4 (19-162)||(43427247-43427390)
chr4 (171-341)||(43427035-43427205)
chr4 (203-341)||(43422457-43422595)
chr4 (36-146)||(43422685-43422795)
[»] scaffold0252 (2 HSPs)
scaffold0252 (19-162)||(21215-21358)
scaffold0252 (159-294)||(21050-21185)
[»] chr5 (2 HSPs)
chr5 (162-341)||(40186092-40186262)
chr5 (33-158)||(40185928-40186055)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 159 - 341
Target Start/End: Complemental strand, 43435722 - 43435540
Alignment:
Q  159 cttatcgcttgcagatatgctctgtaaaagcataatgcaatccagaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcc 258  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  43435722 cttatcgcttgcagagatgctctttaaaagcataatgcaatccagaactgaaggcttatatgaactatccatcatatgctcataaagcttgacagcatcc 43435623  T
Q  259 tccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctc 341  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43435622 tccatcatcttattcttttgaagcttcctcgatatcttaatgtaagtattaagatccaattcatgaccgacactcttcatctc 43435540  T

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Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 159 - 341
Target Start/End: Complemental strand, 43443916 - 43443734
Alignment:
Q  159 cttatcgcttgcagatatgctctgtaaaagcataatgcaatccagaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcc 258  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  43443916 cttatcgcttgcagagatgctctttaaaagcataatgcaatccagaactgaaggcttatatgaactatccatcatatgctcataaagcttgacagcatcc 43443817  T
Q  259 tccatcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctc 341  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43443816 tccatcatcttattcttttgaagcttcctcgatatcttaatgtaagtattaagatccaattcatgaccgacactcttcatctc 43443734  T

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Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 43435891 - 43435752
Alignment:
Q  23 tatctgactcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgccaaagacctatgaataccatcatagac 122  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43435891 tatctggctcgtagccatcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgtcaaagacctatgaataccatcatagac 43435792  T
Q  123 tgccttggaaagagtataccctgccgactcgaatttctta 162  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  43435791 tgccttggaaagagtataccctgatgactcgaatttctta 43435752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 43444085 - 43443946
Alignment:
Q  23 tatctgactcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgccaaagacctatgaataccatcatagac 122  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43444085 tatctggctcgtagccatcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgtcaaagacctatgaataccatcatagac 43443986  T
Q  123 tgccttggaaagagtataccctgccgactcgaatttctta 162  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  43443985 tgccttggaaagagtataccctgatgactcgaatttctta 43443946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 43427390 - 43427247
Alignment:
Q  19 atgttatctgactcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgccaaagacctatgaataccatcat 118  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  43427390 atgttatctggttcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacctgtcaaagacctatgaataccatcat 43427291  T
Q  119 agactgccttggaaagagtataccctgccgactcgaatttctta 162  Q
    |||||||||||||||||||||||||||  ||||| |||||||||    
T  43427290 agactgccttggaaagagtataccctgttgactcaaatttctta 43427247  T

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Target: chr4; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 171 - 341
Target Start/End: Complemental strand, 43427205 - 43427035
Alignment:
Q  171 agatatgctctgtaaaagcataatgcaatccagaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatctta 270  Q
    ||||| ||||| |||||||| |||||||||| || |||  |||| |||||||||||||||||||||||| ||||||||||||   |||||||||||| ||    
T  43427205 agataggctctttaaaagcacaatgcaatccggagctgtaggcttatatgaactatccatcatatgctcgtaaagcttgacactgtcctccatcatccta 43427106  T
Q  271 ttcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctc 341  Q
    || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43427105 ttatttagaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctc 43427035  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 341
Target Start/End: Complemental strand, 43422595 - 43422457
Alignment:
Q  203 gaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcctccatcatcttattcttttgaagctgcctcgatatcttaatgta 302  Q
    |||| ||||||| |||||||| |||||||||| |||| |||||||| |||||||||| |||||||| |||||||  || |||| | | |||||| || ||    
T  43422595 gaaccgatggctcatatgaaccatccatcataagctcgtaaagcttaacagcatccttcatcatctgattctttacaaactgcattgttatcttcatata 43422496  T
Q  303 agtatcaagatccaattcatgaccgacactcttcatctc 341  Q
    ||||||||  |||||||||| |   ||||||||||||||    
T  43422495 agtatcaatctccaattcataattcacactcttcatctc 43422457  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 43422795 - 43422685
Alignment:
Q  36 gccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgccaaagacctatgaataccatcatagactgccttggaaaga 135  Q
    |||| ||||| |||| ||||  ||||| ||||||||||  |||||||||||  |||||| |||| |||| || || |||||||||| | ||||||  |||    
T  43422795 gccaccatttctcatagtcttaacaatattttcagctttgtcaaatttccccacacttgtcaaacacctgtgtattccatcatagatttccttggtgaga 43422696  T
Q  136 gtataccctgc 146  Q
    |||||||||||    
T  43422695 gtataccctgc 43422685  T

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Target: scaffold0252 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 21358 - 21215
Alignment:
Q  19 atgttatctgactcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgccaaagacctatgaataccatcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  21358 atgttatctgactcgtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttccgagcacttgtcaaagacctatgaataccatcat 21259  T
Q  119 agactgccttggaaagagtataccctgccgactcgaatttctta 162  Q
    |||||||||||||||||||||||||||   ||||||||||||||    
T  21258 agactgccttggaaagagtataccctgtttactcgaatttctta 21215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 159 - 294
Target Start/End: Complemental strand, 21185 - 21050
Alignment:
Q  159 cttatcgcttgcagatatgctctgtaaaagcataatgcaatccagaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcc 258  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  21185 cttatcgcttgcagatgtgctctttaaaagcataatgcaatccagaactgatggcttatatgaactatccatcatatgctcataaagcttgacaacatcc 21086  T
Q  259 tccatcatcttattcttttgaagctgcctcgatatc 294  Q
    ||||||||||||||||||||||||||||||||||||    
T  21085 tccatcatcttattcttttgaagctgcctcgatatc 21050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 341
Target Start/End: Original strand, 40186092 - 40186262
Alignment:
Q  162 atcgcttgcagatatgctctgtaaaagcataatgcaatccagaactgatggctgatatgaactatccatcatatgctcataaagcttgacagcatcctcc 261  Q
    ||||||| |||  ||| ||| ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| ||||  |         |||    
T  40186092 atcgctttcagcgatgttctttaaaagcataatgcagtccagaactgatggcttgtatgaactatccatcatatgctcatgaagcccg---------tcc 40186182  T
Q  262 atcatcttattcttttgaagctgcctcgatatcttaatgtaagtatcaagatccaattcatgaccgacactcttcatctc 341  Q
    |||||| |||||| ||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||||||||||||||    
T  40186183 atcatcctattctcttgaagctgcctcgatatctttatggaagtattgagatccaattcatgaccgacactcttcatctc 40186262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 40185928 - 40186055
Alignment:
Q  33 gtagccagcatttttcatggtctcgacaatcttttcagcttcatcaaatttcccagcacttgccaaagacctatgaataccatcatagactgccttggaa 132  Q
    ||||||||||||| |||||||||  |||||  ||| ||||||||||||||||||||||||||  |||||| || | ||||||||||||||| ||||||||    
T  40185928 gtagccagcatttgtcatggtcttaacaataatttgagcttcatcaaatttcccagcacttgtaaaagacttaaggataccatcatagacttccttggaa 40186027  T
Q  133 agagtata--ccctgccgactcgaattt 158  Q
    ||||||||  ||||| ||||||||||||    
T  40186028 agagtataccccctgtcgactcgaattt 40186055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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