View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_2 (Length: 597)
Name: NF7753_low_2
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 13 - 581
Target Start/End: Complemental strand, 38400484 - 38399910
Alignment:
| Q |
13 |
tatattattctgcctacatggtacgtagacactgatatagctagttaagtcaattacattacatgatagtattacaaattatttcccttttcctttgaga |
112 |
Q |
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| T |
38400484 |
tatattattctgcctacatggtacgtagacattgatatagctagttaagtcaattacattacatgatagtattacaaattatttcccttttgctttgaga |
38400385 |
T |
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| Q |
113 |
taaaattgaaagttggaatagtgagattgatctttatgcatgcatgcttcacactctctctttatatagctttaattatcatcatcatcat------ggt |
206 |
Q |
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| T |
38400384 |
taaaattgaaagttggaatagtgagattgatctttatgcatgcatgcttcacactctctctttatatagctttaattatcatcatcatcatcatcatggt |
38400285 |
T |
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| Q |
207 |
aaccatccacccatgtagttattcatgcttggccctgctgtcaccaccactgatcctggatcagcctgatatctgcataagcttaaacaaaattttatgt |
306 |
Q |
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| T |
38400284 |
aaccatccacccatgtagttattcatgcttggccctgctgtcaccaccactgatcctggatcagcctgatatctgcataagcttaaacaaaattttatgt |
38400185 |
T |
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| Q |
307 |
caaaaatatacaactaaaatcttaaacatatgatttattttttaatgaagattactaaacaccgacccaatttgtaacgttggttcacactcaataggtt |
406 |
Q |
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| T |
38400184 |
caaaaatatacaattaaaatcttaaacatatgatttattttttaatgaagattactaaacaccgacccaatttgtaacgttggttcacactcaataggtt |
38400085 |
T |
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| Q |
407 |
gaaatacatcatgatcaccctggttttgacctggatgatggcgtccatatcccatatcttcagcactcagattcagttggagtgaatttatttgataccc |
506 |
Q |
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| T |
38400084 |
gaaatacatcatgatcaccctggttttgacctggatgatggcgtccatatcccatatcttcagcactcagattcagttggagtgaatttatttgataccc |
38399985 |
T |
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| Q |
507 |
ttccatctgaaacaaaaacatcacaagtcactatcattaaccaacccctcaaatttcaataccatatgtaggaat |
581 |
Q |
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| T |
38399984 |
ttccatctgaaacaaaaacatcacaagtcactatcattaaccaacccctcaaatttcaataccatatgtaggaat |
38399910 |
T |
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