View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_20 (Length: 327)
Name: NF7753_low_20
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 305
Target Start/End: Complemental strand, 30511961 - 30511661
Alignment:
| Q |
5 |
ctgaagcttgctgttccttcagctgtaatggtttggtaatcaccttctctagcaattaaggactacataacacaacttagttaattttctttttagaggt |
104 |
Q |
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| T |
30511961 |
ctgaagcttgctgttccttcagctgtaatggtttggtaatcaccttctctggcaattaaggactacataacacaacatagttaattttctttttagaggt |
30511862 |
T |
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| Q |
105 |
tctaacgttgtttccatttttatttccgacaacttggtgagcagcttggaaatgtggtcatttgaattaatggttcttctttccggtcttcttccaaatc |
204 |
Q |
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| T |
30511861 |
tctaatgttgtttccatttttatttccgacaacttggtgagcagcttggaaatgtggtcatttgaattaatggttcttctttccggtcttcttccaaatc |
30511762 |
T |
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| Q |
205 |
cgaagttggaaacatcagtgctttctatcaggttgatttcatattgaagattctcttcaatattattgactttattattatgattttcattaaccttttg |
304 |
Q |
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| T |
30511761 |
cgaagttggaaacatcagtactttctatcaggttggtttcatattgaagattctcttcaatattattgactttattattatgattttcattaaccttttg |
30511662 |
T |
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| Q |
305 |
t |
305 |
Q |
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| T |
30511661 |
t |
30511661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 90 - 271
Target Start/End: Original strand, 24707963 - 24708145
Alignment:
| Q |
90 |
tttctttttagaggttctaacgttgtttccattttt-atttccgacaacttggtgagcagcttggaaatgtggtcatttgaattaatggttcttctttcc |
188 |
Q |
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| T |
24707963 |
tttctttttagagattctaatgttgttttcattttttattttcgggaacatggcaagcagcttggaattgtggtcatttgaattgatggttcttctttcc |
24708062 |
T |
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| Q |
189 |
ggtcttcttccaaatccgaagttggaaacatcagtgctttctatcaggttgatttcatattgaagattctcttcaatattatt |
271 |
Q |
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| T |
24708063 |
ggtcttcttccaaatccaaagttggaaacatcagtgctttctatttggtttgtttcatattcaagatccttttcgatattatt |
24708145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 30484315 - 30484210
Alignment:
| Q |
144 |
agcagcttggaaatgtggtcatttgaattaatggttcttctttccggtcttcttccaaatccgaagttggaaacatcagtgctttctatcaggttgattt |
243 |
Q |
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|||||| |||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| |||||||||||||| |||||||||||| ||||| || |
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| T |
30484315 |
agcagcatggaaatgtggtcatttgaattgatggttctcctttctggtgttcttccaaatccaaagttggaaacatctgtgctttctatctggttggttg |
30484216 |
T |
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| Q |
244 |
catatt |
249 |
Q |
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|||||| |
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| T |
30484215 |
catatt |
30484210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 30502147 - 30502046
Alignment:
| Q |
147 |
agcttggaaatgtggtcatttgaattaatggttcttctttccggtcttcttccaaatccgaagttggaaacatcagtgctttctatcaggttgatttcat |
246 |
Q |
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||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||| |||||| |
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| T |
30502147 |
agcttggaaatatggtcatttgaattagtggttctcctttccggtctccttccaaatccaaagttggaaacatcggtgctttctatctggttagtttcat |
30502048 |
T |
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| Q |
247 |
at |
248 |
Q |
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|| |
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| T |
30502047 |
at |
30502046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 30484503 - 30484453
Alignment:
| Q |
5 |
ctgaagcttgctgttccttcagctgtaatggtttggtaatcaccttctcta |
55 |
Q |
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| T |
30484503 |
ctgaagcttgccattccttcagctgtaatggtttggtaatcaccttctcta |
30484453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 30380667 - 30380598
Alignment:
| Q |
163 |
catttgaattaatggttcttctttccggtcttcttccaaatccgaagttggaaacatcagtgctttctat |
232 |
Q |
| |
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|||||||| ||||||| |||||||| ||| |||||| ||||| || ||| ||||||||||||||||||| |
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| T |
30380667 |
catttgaactaatggtgcttctttctggtgctcttcccaatccaaaattgcaaacatcagtgctttctat |
30380598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 30502314 - 30502265
Alignment:
| Q |
6 |
tgaagcttgctgttccttcagctgtaatggtttggtaatcaccttctcta |
55 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||| |||| |
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| T |
30502314 |
tgaagcttgccattccttcagctgcaatggtttggtaatcaccttttcta |
30502265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24707819 - 24707871
Alignment:
| Q |
1 |
ttttctgaagcttgctgttccttcagctgtaatggtttggtaatcaccttctc |
53 |
Q |
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|||| |||||||||| ||||||| ||| ||||||||||||||||| |||||| |
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| T |
24707819 |
ttttatgaagcttgccattccttcggctataatggtttggtaatcatcttctc |
24707871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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