View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_22 (Length: 309)
Name: NF7753_low_22
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_22 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 29647211 - 29646919
Alignment:
| Q |
18 |
gtgttttgatcgtacatctttcaattttgtaggtca--tactatttatattttttcctattcttatctaaaataatttagtttgccgttaaagaaaaata |
115 |
Q |
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| T |
29647211 |
gtgttttgatcgtacatctttcaattttgtaggtcaattactatttatattttt-cctattcttatctaaaataatttagtttgccattaaagaaaaata |
29647113 |
T |
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| Q |
116 |
tttgtatattatattatttttgaacaaacaacatttatgcaatgaaaattaaattaaatttgacatagatattacacaaataattaaaaattggaaaagg |
215 |
Q |
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| T |
29647112 |
tttgtatattatattatttttgcacaaacaacatttatgcaatgaaaattaaattaaatgtgtcatagatattacacaaataattataaattggaaaatg |
29647013 |
T |
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| Q |
216 |
actatcaaatgtatcgttttatacatgatgcaaaaaagatatatcattttatactcctttttctgtcaatttattctaacctacattttgtact |
309 |
Q |
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| T |
29647012 |
actatcaaatgtatcgttttatacatgatgcaaaaaagatatatcattttatactcctttttgtatcaatttattctaacctacattttgtact |
29646919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 306
Target Start/End: Complemental strand, 29639132 - 29638986
Alignment:
| Q |
160 |
aaaattaaattaaatttgacatagatattacacaaataattaaaaattggaaaaggac-tatcaaatgtatcgttttatacat-gatgcaaaaaagatat |
257 |
Q |
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|||||||||| |||||||| ||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| | |||| |||||| |
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| T |
29639132 |
aaaattaaataaaatttgatataaatattacacaaataattaaaaattggaaaaagacttttcaaatgtatcgttttatacttggatgaaaaaaa----- |
29639038 |
T |
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| Q |
258 |
atcattttata---ctcctttttctgtcaatttattctaacctacattttgt |
306 |
Q |
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| T |
29639037 |
atcattttatacgccttctttttgtatcaatttattctaacctgcattttgt |
29638986 |
T |
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