View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_25 (Length: 296)
Name: NF7753_low_25
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_25 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 56 - 284
Target Start/End: Original strand, 31289890 - 31290118
Alignment:
| Q |
56 |
tcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgt |
155 |
Q |
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||||||| || |||||||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31289890 |
tcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgt |
31289989 |
T |
|
| Q |
156 |
aatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggcaattgctgtcacactttttctcctctgttgctaccaatggat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31289990 |
aatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggaaattgctgtcacactttttctcctctgttgctaccaatggat |
31290089 |
T |
|
| Q |
256 |
agaggaaattttggggtgttcagcttctt |
284 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
31290090 |
agaggaaattttggggtgttcagcttctt |
31290118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 27421243 - 27421059
Alignment:
| Q |
5 |
tcgattgtgaggattccctatggacattccttgacgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtgga |
104 |
Q |
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||||||||||||||||||||||||||||||||||| || | | |||||||||| |||| || ||||||||| | | |||||||| || ||| || |
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| T |
27421243 |
tcgattgtgaggattccctatggacattccttgacacgatccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcaga |
27421144 |
T |
|
| Q |
105 |
aacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctgattt |
189 |
Q |
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| T |
27421143 |
aacatcacaacacccgaccttcagcttcaatatccctggtttctgcatcatcatattttatcccagcggtgatgagtgctgattt |
27421059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 26652164 - 26652300
Alignment:
| Q |
5 |
tcgattgtgaggattccctatggacattccttgacgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtgga |
104 |
Q |
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|||||||||||||||||||||||||||||||||| | | | | ||||||||| |||| | ||||||||||||| | | ||| ||||||| ||| || |
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| T |
26652164 |
tcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcaga |
26652263 |
T |
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| Q |
105 |
aacatcacaacacccgaccttcagcttcaatatccct |
141 |
Q |
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| T |
26652264 |
aacatcacatcacccgaccttcagcttcaatatccct |
26652300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 26758132 - 26758268
Alignment:
| Q |
5 |
tcgattgtgaggattccctatggacattccttgacgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtgga |
104 |
Q |
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|||||||||||||||||||||||||||||||||| | | | | ||||||||| |||| | ||||||||||||| | | ||| ||||||| ||| || |
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| T |
26758132 |
tcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcaga |
26758231 |
T |
|
| Q |
105 |
aacatcacaacacccgaccttcagcttcaatatccct |
141 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
26758232 |
aacatcacatcacccgaccttcagcttcaatatccct |
26758268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 26632715 - 26632865
Alignment:
| Q |
16 |
gattccctatggacattccttgacgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaac |
115 |
Q |
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|||| ||||||||||||||||||| | | | | |||| || |||| || ||||| |||| || | | |||||||| |||||||||||||||||||||| |
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| T |
26632715 |
gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac |
26632814 |
T |
|
| Q |
116 |
acccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatc |
166 |
Q |
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|||||||||||||||||| ||||||| | |||||||| |||||||||||| |
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| T |
26632815 |
acccgaccttcagcttcagtatccctggtatctgcatcctaatctttgatc |
26632865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 26738691 - 26738841
Alignment:
| Q |
16 |
gattccctatggacattccttgacgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaac |
115 |
Q |
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|||| ||||||||||||||||||| | | | | |||| || |||| || ||||| |||| || | | |||||||| |||||||||||||||||||||| |
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| T |
26738691 |
gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac |
26738790 |
T |
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| Q |
116 |
acccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatc |
166 |
Q |
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|||||||||||||||||| ||||||| | |||||||| |||||||||||| |
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| T |
26738791 |
acccgaccttcagcttcagtatccctggtatctgcatcctaatctttgatc |
26738841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 272
Target Start/End: Original strand, 31394780 - 31394966
Alignment:
| Q |
87 |
cactgacgcagtggtgg-aaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctg |
185 |
Q |
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||||| ||||||||||| |||| |||||||||| |||||||||||||||||| | | ||| |||||| | |||||| |||| |||| |||| || | |
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| T |
31394780 |
cactgtcgcagtggtggtaaacgtcacaacacctgaccttcagcttcaatatacatggtttttgcatcatcatctttaatccatgcggttatgaacgcag |
31394879 |
T |
|
| Q |
186 |
atttcgttccctggcggcgatttccggcaattgctgtcacactttttctcctctgttgctaccaatggatagaggaaattttggggt |
272 |
Q |
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|||||||| |||||| ||||| | ||| |||||||| |||||||||||| ||||| || ||||||||| ||| ||||||| |
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| T |
31394880 |
atttcgttattgggcggcaatttctgatcatttctgtcacagtttttctcctctattgctggcattggatagagcaaaacttggggt |
31394966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 27421061 - 27421005
Alignment:
| Q |
228 |
tttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttctt |
284 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||| |||| ||||||||||| |
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| T |
27421061 |
tttttctcctctgtggctaccaactgatagagaaaattttagggttttcagcttctt |
27421005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 66120 - 66304
Alignment:
| Q |
5 |
tcgattgtgaggattccctatggacattccttgacgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtgga |
104 |
Q |
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||||||||||||||||||||||||||||||||||| || | | |||||||||| |||| || ||||||||| | | |||||||| || ||| || |
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| T |
66120 |
tcgattgtgaggattccctatggacattccttgacacgatccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcaga |
66219 |
T |
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| Q |
105 |
aacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctgattt |
189 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| | || ||| ||||| ||||||||||||||||||| |
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| T |
66220 |
aacatcacaacacccgaccttcagcttcaatatccctggtttctgcatcatcatattttatcccagcggtgatgagtgctgattt |
66304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 66302 - 66358
Alignment:
| Q |
228 |
tttttctcctctgttgctaccaatggatagaggaaattttggggtgttcagcttctt |
284 |
Q |
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|||||||||||||| |||||||| ||||||| ||||||| |||| ||||||||||| |
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| T |
66302 |
tttttctcctctgtggctaccaactgatagagaaaattttagggttttcagcttctt |
66358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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