View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_28 (Length: 284)
Name: NF7753_low_28
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_28 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 8112615 - 8112349
Alignment:
| Q |
17 |
cctgtggtcttttgcctctttgtgccaaattctatcaataattcaaaaggggattgatctcattttttctttcttggagattactgcattttaaagatct |
116 |
Q |
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| T |
8112615 |
cctgtggtcttttgcctctttgtgccaaattctatcaataattcaaaaggggattgatctcattttttctttcttggagattactgcattttaaagatct |
8112516 |
T |
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| Q |
117 |
aaagcttatttaaagaacacttttgactgcgttatatctcttgatttattagtaaataggtagcaattgtatattgtnnnnnnnnnnnnnnnnnnctaca |
216 |
Q |
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| T |
8112515 |
aaagcttatttaaagaacacttttgactacgttatatctcttgatttgttagtaaataggtagcaattgtatattgtaaaaaagaaagaaaaaaactaca |
8112416 |
T |
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| Q |
217 |
agaccatctatcttttttgggtggactatccatgaccggcgaacaaaatatatgcaaagcataaataa |
284 |
Q |
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| T |
8112415 |
acaccatctatcttttttgggt-gactatccatgacccgcgaacaaaatatatgcaaagcataaataa |
8112349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 8108029 - 8107908
Alignment:
| Q |
19 |
tgtggtcttttgcctctttgtgccaaattctatcaataattcaaaaggggattgatctcattttttctttcttggagattactgcattttaaagatctaa |
118 |
Q |
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| T |
8108029 |
tgtggtcttttgcctctttgtgccaaattctatcaatagttcaaaagggaattgatcttattttttctttcttggagattactgcattttaaagatctaa |
8107930 |
T |
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| Q |
119 |
agcttatttaaagaacactttt |
140 |
Q |
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| T |
8107929 |
agcttatttaaagaacactttt |
8107908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 8107863 - 8107805
Alignment:
| Q |
135 |
acttttgactgcgttatatctcttgatttattagtaaataggtagcaattgtatattgt |
193 |
Q |
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| T |
8107863 |
acttttgactgcgttatatctcttgatttgttagtaaataggtagcaattgtatattgt |
8107805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 8094302 - 8094219
Alignment:
| Q |
40 |
gccaaattctatcaataattcaaaaggggattgatctcattttttctttcttggagattactgcattttaaagatctaaagctta |
124 |
Q |
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| T |
8094302 |
gccaaattctatcaacagttcaaaagatgattgatcttaattttt-tttcttggagattactgtattttaaagatctaaagctta |
8094219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 8107776 - 8107714
Alignment:
| Q |
221 |
catctatcttttttgggtggactatccatgaccggcgaacaaaatatatgcaaagcataaataa |
284 |
Q |
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||||| ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |
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| T |
8107776 |
catctttcttttttgggtg-accatccatgaccggggaacaaaatatatgcaaagcataaataa |
8107714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 30878923 - 30878977
Alignment:
| Q |
135 |
acttttgactgcgttatatctcttgatttattagtaaataggtagcaattgtata |
189 |
Q |
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| T |
30878923 |
acttttgactgtgttatatctcttgatttattagcaaatagatagaaattgtata |
30878977 |
T |
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