View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7753_low_29 (Length: 271)
Name: NF7753_low_29
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_29 |
 | |
|
| [»] scaffold0794 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 11445592 - 11445830
Alignment:
| Q |
21 |
agcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggctaattcagtaagagtcattggttttccctggttgtgga |
120 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11445592 |
agcaggcgcaagagacgatacaggacactaactttcgaaggatggagtttcaaagatgaagctaattcagtaagagtcattggttttccatggttgtgga |
11445691 |
T |
|
| Q |
121 |
ttgcatcagctatgcctagttccacagcagatttgagtgccatggaatttataaagctgtatatatgtttgtataaatggatttgagcatgatatagctg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
11445692 |
ttgcatcagctatgcctagttccacagcagatttgagtgccatggaatttataaagctgtatatatgtttgtacagatggatttgagcatgatatagctg |
11445791 |
T |
|
| Q |
221 |
actttcttcactgccattgctaatgaaatccatattctt |
259 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
11445792 |
actttcttcactgccattgctactggaatccattttctt |
11445830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 259
Target Start/End: Complemental strand, 11547498 - 11547260
Alignment:
| Q |
21 |
agcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggctaattcagtaagagtcattggttttccctggttgtgga |
120 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11547498 |
agcaggcgcaagagacgatacaggacactaactttcgaaggatggagtttcaaagatgaagctaattcagtaagagtcattggttttccatggttgtgga |
11547399 |
T |
|
| Q |
121 |
ttgcatcagctatgcctagttccacagcagatttgagtgccatggaatttataaagctgtatatatgtttgtataaatggatttgagcatgatatagctg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | ||| |
|
|
| T |
11547398 |
ttgcatcagctatgcctagttccacagcagatttgagtgccatggaatttataaagctgtatatatgtttgtacagatggatttgagcatgataaaactg |
11547299 |
T |
|
| Q |
221 |
actttcttcactgccattgctaatgaaatccatattctt |
259 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
11547298 |
actttcttcactgccattgctactggaatccattttctt |
11547260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 11507267 - 11507035
Alignment:
| Q |
21 |
agcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggctaattcagtaagagtcattggttttccctggttgtgga |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
11507267 |
agcaagcgcaagagacgataaaggacactaactttagaagggtggagtttcaaagatgaagctaattcagtaagagtcattggttttccatggttttgga |
11507168 |
T |
|
| Q |
121 |
ttgcatcagctatgcctagttccacagcagatttgagtgccatggaatttataaagctgtatatatgtttgtataaatggatttgagcatgatatagctg |
220 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||| || || |
|
|
| T |
11507167 |
ttgcatctgctatgcctagttccacggctgatttgagtgccatggaatttataaagccgtatatatgtttgtacagatggatttgagcgtgatacagttg |
11507068 |
T |
|
| Q |
221 |
actttcttcactgccattgctaatgaaatccat |
253 |
Q |
| |
|
| |||||||||||||||||||| |||||||||| |
|
|
| T |
11507067 |
attttcttcactgccattgctactgaaatccat |
11507035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 11468564 - 11468796
Alignment:
| Q |
21 |
agcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggctaattcagtaagagtcattggttttccctggttgtgga |
120 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||||| || ||||| || ||||||| |
|
|
| T |
11468564 |
agcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattcaggaacagtcataggctttccatgtttgtgga |
11468663 |
T |
|
| Q |
121 |
ttgcatcagctatgcctagttccacagcagatttgagtgccatggaatttataaagctgtatatatgtttgtataaatggatttgagcatgatatagctg |
220 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11468664 |
ttgcatctactattcctagttccacagcagatttgagtgccatggaacttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctg |
11468763 |
T |
|
| Q |
221 |
actttcttcactgccattgctaatgaaatccat |
253 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| |
|
|
| T |
11468764 |
agtttcttcactgccattgctcttgaaatccat |
11468796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 11522897 - 11522665
Alignment:
| Q |
21 |
agcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggctaattcagtaagagtcattggttttccctggttgtgga |
120 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||||| || ||||| || ||||||| |
|
|
| T |
11522897 |
agcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattcaggaacagtcataggctttccatgtttgtgga |
11522798 |
T |
|
| Q |
121 |
ttgcatcagctatgcctagttccacagcagatttgagtgccatggaatttataaagctgtatatatgtttgtataaatggatttgagcatgatatagctg |
220 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11522797 |
ttgcatctactattcctagttccacagcagatttgagtgccatggaacttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctg |
11522698 |
T |
|
| Q |
221 |
actttcttcactgccattgctaatgaaatccat |
253 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| |
|
|
| T |
11522697 |
agtttcttcactgccattgctcttgaaatccat |
11522665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 34784051 - 34783870
Alignment:
| Q |
49 |
taactttcgaagggtggagtttcaaagatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagc |
148 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| || |
|
|
| T |
34784051 |
taactttagaagggtggagttttaaagatgaggctaattcagaaagagtcattggttttccatggttatggattgcatcagctatgcctagttccatggc |
34783952 |
T |
|
| Q |
149 |
agatttgagtgccatggaatttataaagctgtatatatgtttgtataaatggatttgagcatgatatagctgactttcttca |
230 |
Q |
| |
|
|||||||||||||||||| | | |||| |||||| ||||||||| |||||||||||||||||||| || | |||||||||| |
|
|
| T |
34783951 |
tgatttgagtgccatggaactaacaaagttgtatacatgtttgtacaaatggatttgagcatgatacagttcactttcttca |
34783870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 49 - 230
Target Start/End: Complemental strand, 34775830 - 34775649
Alignment:
| Q |
49 |
taactttcgaagggtggagtttcaaagatgaggctaattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagc |
148 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| || |
|
|
| T |
34775830 |
taactttagaagggtgaagtttcaaagatgaggctagttcagaaagagtcattggttttccatggttgtgaattgcatcagctatgcctagttccatggc |
34775731 |
T |
|
| Q |
149 |
agatttgagtgccatggaatttataaagctgtatatatgtttgtataaatggatttgagcatgatatagctgactttcttca |
230 |
Q |
| |
|
|||||||| ||||||||| | | |||| |||||| ||||||||| |||||||||||||||||||| || | |||||||||| |
|
|
| T |
34775730 |
tgatttgagagccatggaactaacaaagttgtatacatgtttgtacaaatggatttgagcatgatacagttcactttcttca |
34775649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 1924 - 1692
Alignment:
| Q |
21 |
agcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggctaattcagtaagagtcattggttttccctggttgtgga |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
1924 |
agcaagcgcaagagacgataaaggacactaactttagaagggtggagtttcaaagatgaagctaattcagtaagagtcattggttttccatggttttgga |
1825 |
T |
|
| Q |
121 |
ttgcatcagctatgcctagttccacagcagatttgagtgccatggaatttataaagctgtatatatgtttgtataaatggatttgagcatgatatagctg |
220 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||| || || |
|
|
| T |
1824 |
ttgcatctgctatgcctagttccacggctgatttgagtgccatggaatttataaagccgtatatatgtttgtacagatggatttgagcgtgatacagttg |
1725 |
T |
|
| Q |
221 |
actttcttcactgccattgctaatgaaatccat |
253 |
Q |
| |
|
| |||||||||||||||||||| |||||||||| |
|
|
| T |
1724 |
attttcttcactgccattgctactgaaatccat |
1692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University