View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_3 (Length: 528)
Name: NF7753_low_3
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 7896705 - 7896200
Alignment:
| Q |
18 |
cttcagacgttgcacaatgagttacaacaaaggtttgcggccgttttatggagtttatggaagcaccgtaataacaagctatggcaaaatgaaaatgaga |
117 |
Q |
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| T |
7896705 |
cttcagactttacacaatgagttacaacaaaggtttgcggccgttttatggagtttatggaagcaccgcaataacaagctatggcaaaatgaaaacgaga |
7896606 |
T |
|
| Q |
118 |
cggctgcccaagtgatttttagagctcaaaaccttatggagggttgggtatcggtgaatacaacttcgactcattcctcggtttcacacggttcacgagc |
217 |
Q |
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| T |
7896605 |
cggctgcccaagtgatttttagagcttaaaaccttatggagggttgggtatcggtgaatacaacttcgactcattcctcggtttcacacgtttcacgagc |
7896506 |
T |
|
| Q |
218 |
agatcagcaccgacagtctgtacaggcaaatgcatgtgtatggcagaaaccgcagcagggtcgtttcaaatgcaacattgacgccgctttttcctcggtg |
317 |
Q |
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| T |
7896505 |
agatcagcacggacagtctgtacaggaaaatgcatgtgtatggcagaaaccgcagcagggtcgtttcaaatgcaacattgacgccactttttcctc-gtg |
7896407 |
T |
|
| Q |
318 |
tggaaccgtaacggtattggtgtttgtttgcgtgatgacaacggtacgtatgtacttgcgcaaacaaggagatttcccacacaacttgctgttgatgttg |
417 |
Q |
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| T |
7896406 |
tggaaccgtacgggtattggtgtttgtttgtgtgatgacaacggcacgtatgtacttgcgcaaacaaggagatttcccacacaacttgctgttgatgttg |
7896307 |
T |
|
| Q |
418 |
gagaagccatggggctgtttcatgccattcaatggttaacagacatgaaatttgataatgtggactttgtgaccgattccaaagtaacagcagaagcttt |
517 |
Q |
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| T |
7896306 |
gagaagccatggggctgtttcatgccattcaatggttaacagacatgaaatttgataatgtggactttgtgaccgattccaaagtaacagcagaagcttt |
7896207 |
T |
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| Q |
518 |
caattca |
524 |
Q |
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| T |
7896206 |
caattca |
7896200 |
T |
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Back To:
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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 507
Target Start/End: Original strand, 8565885 - 8565924
Alignment:
| Q |
468 |
tttgataatgtggactttgtgaccgattccaaagtaacag |
507 |
Q |
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| T |
8565885 |
tttgataatgtggactttgtgtctgattccaaagtaacag |
8565924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 507
Target Start/End: Complemental strand, 8119067 - 8119029
Alignment:
| Q |
469 |
ttgataatgtggactttgtgaccgattccaaagtaacag |
507 |
Q |
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| T |
8119067 |
ttgataatgtggattttgtgactgattccaaagtaacag |
8119029 |
T |
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