View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_30 (Length: 267)
Name: NF7753_low_30
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 46790390 - 46790133
Alignment:
| Q |
18 |
acattcaagatgaaatcacgaccaatgaattgtttgcacgacatgtgtaaacaaagttgcagacagtgattcgata-----------------atgagga |
100 |
Q |
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| T |
46790390 |
acattcaagatgaaatcgcgaccaatgaattgtttgcacgacatgcgtaaacaaagttgcagacagtgatttgatattctaaatgaaattgcaatgagga |
46790291 |
T |
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| Q |
101 |
atcatatattgagattcttattaaggattaattaggttgttctgtaaatttcaaacaaaacctcnnnnnnncgctgttaaggattctagttaattattag |
200 |
Q |
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| T |
46790290 |
atcatatattgagattcttattaaggattaattaggttgttctgtaaatttcaaacaaaacctctttttttcgctgttaaggattctagttaattattag |
46790191 |
T |
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| Q |
201 |
ttcaatcaagtctagaaatgcaggtgtttaagacctaatgtattacattaacactact |
258 |
Q |
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| T |
46790190 |
ttcaatcaagtctagaaatgcaggtgtttaagacctaatgtattaaattaacactact |
46790133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 31701027 - 31701096
Alignment:
| Q |
93 |
aatgaggaatcatatattgagattcttattaaggattaatt-aggttgttctgtaaatttcaaacaaaac |
161 |
Q |
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| T |
31701027 |
aatgaggaatcataaattgagattctagttaaggattaattaaagttcttctgtaaatttcagacaaaac |
31701096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 216
Target Start/End: Original strand, 9964131 - 9964256
Alignment:
| Q |
92 |
taatgaggaatcatatattgagattcttattaaggattaatta-ggttgttctgtaaatttcaaacaaaacctcnnnnnnncgctgttaaggattctagt |
190 |
Q |
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| T |
9964131 |
taatgaggaatcgtatattgagattctagttcaggattagttagggttcttctctaaatttaagacaaaacctttattttttgttgttaaggattttagt |
9964230 |
T |
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| Q |
191 |
taattattagttcaatcaagtctaga |
216 |
Q |
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||| ||||||| |||| ||||||||| |
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| T |
9964231 |
taaatattagtgcaattaagtctaga |
9964256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 34855985 - 34855913
Alignment:
| Q |
93 |
aatgaggaatcatatattgagattcttattaaggattaatta-ggttgttctgtaaatttcaaacaaaacctc |
164 |
Q |
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| T |
34855985 |
aatgatgaatcatatattgggattctagttgaggattaattagggttcttctataaatttctaacaaaacctc |
34855913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 35370797 - 35370857
Alignment:
| Q |
93 |
aatgaggaatcatatattgagattcttattaaggattaatta-ggttgttctgtaaatttc |
152 |
Q |
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| T |
35370797 |
aatgaggaatcatatattgggattctagttaatgattaattagggttcttctgtaaatttc |
35370857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 35378597 - 35378656
Alignment:
| Q |
93 |
aatgaggaatcatatattgagattcttattaaggattaatta-ggttgttctgtaaattt |
151 |
Q |
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| T |
35378597 |
aatgaggaatcatatattgggattctagttaagggttaattagggttcttctgtaaattt |
35378656 |
T |
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