View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_31 (Length: 262)
Name: NF7753_low_31
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 32997411 - 32997640
Alignment:
| Q |
17 |
gtggtcatgtccattgttgagaggaattgtcccggatcaaaatattccacagtaatgcacttatagatcgactcaccaaggctttctctaccattctgac |
116 |
Q |
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| T |
32997411 |
gtggtcatgtccattgttgagaggaattgtcccggatcaaagtattccacagtaatgcacttatagattgactcaccaaggctttctctaccattctgac |
32997510 |
T |
|
| Q |
117 |
aaagacatgaaagaaaataaaaacttagttacataaagatttcagcattatctctataccataccgtgagatcataaagcgnnnnnnnaaaagctctctc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
32997511 |
aaagacatgaaagaaaataaaaacttagttacataaagatttcagcattatctctataccataccgtgagatcataaagcgtttttttataagctctctc |
32997610 |
T |
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| Q |
217 |
aaacggtctcacaagtgcttatattacaag |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32997611 |
aaacggtctcacaagtgcttatattacaag |
32997640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 242
Target Start/End: Original strand, 4071963 - 4071998
Alignment:
| Q |
207 |
aagctctctcaaacggtctcacaagtgcttatatta |
242 |
Q |
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| T |
4071963 |
aagctctctcaaacagtctcacaagtgcttatatta |
4071998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 3024713 - 3024746
Alignment:
| Q |
205 |
aaaagctctctcaaacggtctcacaagtgcttat |
238 |
Q |
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| T |
3024713 |
aaaagctctctcaaacagtctcacaagtgcttat |
3024746 |
T |
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