View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_40 (Length: 238)
Name: NF7753_low_40
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 44523856 - 44524049
Alignment:
| Q |
26 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatatctctaaagtacatgttacact |
125 |
Q |
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| T |
44523856 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatgtctctaaagtacatgttacact |
44523955 |
T |
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| Q |
126 |
tacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgtttttgataagcc |
219 |
Q |
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| T |
44523956 |
tacatatatatgtcgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgcttttgataagcc |
44524049 |
T |
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Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 41322289 - 41322105
Alignment:
| Q |
1 |
tgtgccacaaaatatttgttgtaattaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactg |
100 |
Q |
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| T |
41322289 |
tgtgccataaaatatttgttgtaattaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgttcactg |
41322190 |
T |
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| Q |
101 |
atatctctaaagtacatgttacacttacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaag |
185 |
Q |
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| T |
41322189 |
atatctctaaagtacatgttacacttacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaag |
41322105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 37726238 - 37726150
Alignment:
| Q |
26 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatatctctaaagta |
114 |
Q |
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| T |
37726238 |
taatgaaaataaaaatatgatatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtccactgatatctctaaagta |
37726150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 41319115 - 41319080
Alignment:
| Q |
182 |
taagtgtcttcatggctattatttgtttttgataag |
217 |
Q |
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| T |
41319115 |
taagtgtcttcatggctattatttgcttttgataag |
41319080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 12503203 - 12503390
Alignment:
| Q |
26 |
taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatatctctaaagtacatgttacact |
125 |
Q |
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| T |
12503203 |
taatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctctacagtacatg------t |
12503296 |
T |
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| Q |
126 |
tacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgtttttgataagcc |
219 |
Q |
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|||||||||||| |||| ||||||||||| ||||||||||| || |||||||||||||| ||| ||||||||||||| |||||||||||| |
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| T |
12503297 |
tacatatatatgactaatagccaacggtaatgcacatgatataaggaaatatacattaagtggctttatggctattatttccttttgataagcc |
12503390 |
T |
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