View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_44 (Length: 220)
Name: NF7753_low_44
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 48753095 - 48753297
Alignment:
| Q |
1 |
gttagaattctaagctctccttctttccttcttt--aacattcagtgttgtgtgtcattgtcagttgccacttctttctgtttcggtcgtgtaacatgtt |
98 |
Q |
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| T |
48753095 |
gttagaattctaagctctcctt---tccttctttttaacattcagtgttgtgtgtcattgtcagttgccacttctttctgtttcggtcgtgtaacatgtt |
48753191 |
T |
|
| Q |
99 |
tattctattatttgactggtttgtactttgtgtgacaatcactgatgcatacctcaaaacagagaagcagtaaagcaagcaataaacacaaatcagtaga |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48753192 |
tattctattatttgactggtttgtactttgtgtgacaatcactgatgcatacctcaaaacagagaagcagtaaagcaagcaataaacacaaatgagtaga |
48753291 |
T |
|
| Q |
199 |
aatatt |
204 |
Q |
| |
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|||||| |
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| T |
48753292 |
aatatt |
48753297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 52092606 - 52092423
Alignment:
| Q |
26 |
tccttctttaacattcagtgttgtgtgtcattgtcagttgcca--cttctttctgttt--------cggtcgtgtaacatgttt-attctattatttgac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||||| ||||||||||||||| |
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| T |
52092606 |
tccttctttaacattcagtgttgtgtgtcattgtcagttgccattatttattatgttttccaatacacttcttgtaacatgtttaattctattatttgac |
52092507 |
T |
|
| Q |
115 |
tggtttgtactttgtgtgacaatcactgatgcatacctcaaaacagagaagcagtaaagcaagcaataaacacaaatcagtagaaatatt |
204 |
Q |
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| T |
52092506 |
tggtttgtactttgtgtgacaatcactgttgcatacctcaaaacagagaagta------caagcaataaacacaaattagtagaaatatt |
52092423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 33575759 - 33575817
Alignment:
| Q |
141 |
tgatgcatacctcaaaacagagaagcagtaaagcaagcaataaacacaaatcagtagaaa |
200 |
Q |
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||||||| ||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
33575759 |
tgatgcagacctcaaaacagagaagtagtaaa-caagcaataaacacaaatgagtagaaa |
33575817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 38462695 - 38462727
Alignment:
| Q |
90 |
taacatgtttattctattatttgactggtttgt |
122 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
38462695 |
taacatgtttattctattatttgactgttttgt |
38462727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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