View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7753_low_7 (Length: 473)
Name: NF7753_low_7
Description: NF7753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7753_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 22854972 - 22855420
Alignment:
| Q |
19 |
agaagcataatatggcgtacgtctatactcattccatgctgtttcattgtatactgtatctgatcaatgataccatatctggcggcctcaattcccagaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22854972 |
agaagcataatatggcgtacgtctatactcattccatgctgtttcattgtatactgtatctgatcaatgataccatatctggcagcctcaattcccagaa |
22855071 |
T |
|
| Q |
119 |
cgttcctcatttcaatgatatgattagtaacagttttatgtccatcaaccccttcaatacccataacctctttaaggccctcgctgatgggaaaaaatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22855072 |
cgttcctcatttcaatgatatgattagtaacagttttatgtccatcaaccccttcaatacccataacctctttaaggccctcgctgatgggaaaaaatga |
22855171 |
T |
|
| Q |
219 |
atacattcagattagaaaatgattttgacaattaaaattagaattcagagcgacaatagtttactttatcttttcattgctattccttaaaagcatatac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22855172 |
atacattcagattagaaaatgattttgacaattaaaattagaattcagagcgacaatagtttactttatcttttcattgctattccttaaaagcgtatac |
22855271 |
T |
|
| Q |
319 |
acacaacgacgtaaaattagaattcgtcctggttttcactaaacccagtccaccttattcttacaagaccagactgtccccggtcatggttttctttggg |
418 |
Q |
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| T |
22855272 |
acacaacgaagtaaaattagaattcgtcctggttttcactaaacccagtccaccttattcttacaacacccgactgtccccagtcatggttttctttggg |
22855371 |
T |
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| Q |
419 |
tacagcatgataatatcctctatgatcatattcctgattttcatctcac |
467 |
Q |
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| T |
22855372 |
tacagcatgataatatcctctaagatcatattcctgattttcatttcac |
22855420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 22820519 - 22820740
Alignment:
| Q |
19 |
agaagcataatatggcgtacgtctatactcattccatgctgtttcattgtatactgtatctgatcaatgataccatatctggcggcctcaattcccagaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22820519 |
agaagcataatatggcgtacgtctatactcattccatgctgtttcattgtatactgtatctgatcaatgataccatatctggcagcctcaattcccagaa |
22820618 |
T |
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| Q |
119 |
cgttcctcatttcaatgatatgattagtaacagttttatgtccatcaaccccttcaatacccataacctctttaaggccctcgctgatgggaaaaaatga |
218 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | |||||||||| |
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| T |
22820619 |
tgttcatcaattcaatgatatgattagtaacagttttatgtccatcaaccccttcaattcccataacctctttaaggcccttgctgacgagaaaaaatga |
22820718 |
T |
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| Q |
219 |
atacattcagattagaaaatga |
240 |
Q |
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|||||| ||||||||||||||| |
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| T |
22820719 |
atacatgcagattagaaaatga |
22820740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 270 - 467
Target Start/End: Original strand, 22820814 - 22821009
Alignment:
| Q |
270 |
gacaatagtttactttatcttttcattgctattccttaaaagcatatacacacaacgacgtaaaattagaattcgtcctggttttcactaaacccagtcc |
369 |
Q |
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|||||||||||||||||| |||||| |||| ||||||||||||||| ||| ||||| || ||||||||||| ||| ||| ||||||||||| |||||||| |
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| T |
22820814 |
gacaatagtttactttattttttcactgcttttccttaaaagcatacacagacaacaacataaaattagaagtcgacctagttttcactaaccccagtcc |
22820913 |
T |
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| Q |
370 |
accttattcttacaagaccagactgtccccggtcatggttttctttgggtacagcatgataatatcctctatgatcatattcctgattttcatctcac |
467 |
Q |
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|||||||||||||| ||| ||||||||| ||||| ||||||||||| ||||| |||||| |||||| | |||||||||||||||||||| |||| |
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| T |
22820914 |
accttattcttacagcacccgactgtccc--gtcatttttttctttgggcccagcaggataatctcctctctaatcatattcctgattttcatttcac |
22821009 |
T |
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