View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7754_high_2 (Length: 481)

Name: NF7754_high_2
Description: NF7754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7754_high_2
NF7754_high_2
[»] chr3 (11 HSPs)
chr3 (1-480)||(34376099-34376578)
chr3 (356-477)||(34467723-34467844)
chr3 (383-475)||(34477696-34477788)
chr3 (396-475)||(34462643-34462722)
chr3 (356-474)||(34372741-34372859)
chr3 (383-477)||(34473755-34473849)
chr3 (356-410)||(27625894-27625948)
chr3 (34-108)||(32509978-32510052)
chr3 (356-410)||(34511667-34511721)
chr3 (170-219)||(32510108-32510157)
chr3 (387-458)||(27616650-27616721)
[»] chr2 (2 HSPs)
chr2 (383-477)||(10533296-10533390)
chr2 (356-477)||(10526460-10526581)
[»] scaffold1215 (1 HSPs)
scaffold1215 (356-477)||(454-575)
[»] chr4 (1 HSPs)
chr4 (34-138)||(56338936-56339041)
[»] chr6 (6 HSPs)
chr6 (149-214)||(4128837-4128902)
chr6 (271-324)||(4129084-4129137)
chr6 (262-310)||(4100460-4100508)
chr6 (262-310)||(4125791-4125839)
chr6 (174-219)||(16529979-16530024)
chr6 (149-201)||(4099501-4099553)


Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 34376578 - 34376099
Alignment:
Q  1 ttgctctaagcctacttcgcagctcaatccctctggcagaacaaaatttctccactaactaaacattacagtgggactcattccaattcacaaagcaaga 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34376578 ttgctctaagcctacttcgcagctcaatccctttggcagaacaaaatttctccactaactaaacattacagtgggactcattccaattcacaaagcaaga 34376479  T
Q  101 catcttgtttacaacaacatcgcacctctagcttaaacctataatttgtgttgttactgtccttgagtcttccttttatgttgatcttaagtaatcatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34376478 catcttgtttacaacaacatcgcacctctagcttaaacctataatttgtgttgttactgtccttgagtcttccttttatgttgatcttaagtaatcatgt 34376379  T
Q  201 attagttaaacctatatcaactttatggtttgattataatgatagggtaaaataatcatgaatatgtaataagctctcttgttatggttaaatataattg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34376378 attagttaaacctatatcaactttatggtttgattataatgatagggtaaaataatcatgaatatgtaataagctctcttgttatggttaaatataattg 34376279  T
Q  301 gttttaaaaatgagcatgtggagagaagatagtttgatcgaagggccagagtcggtttattaaatatagaaaacaatgaatcagttacaatgatattaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34376278 gttttaaaaatgagcatgtggagagaagatagtttgatcgaagggccagagtcggtttattaaatatggaaaacaatgaatcagttacaatgatattaaa 34376179  T
Q  401 ttcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaaggg 480  Q
    || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34376178 ttaagatagaaattttcactcatgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaaggg 34376099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 356 - 477
Target Start/End: Original strand, 34467723 - 34467844
Alignment:
Q  356 tttattaaatatagaaaacaatgaatcagttacaatgatattaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaaga 455  Q
    |||||||||| |||| |||||||||| ||| |||| ||||||||||||||||||  |||||| ||| |||| ||||||||||||||||| ||||||||||    
T  34467723 tttattaaatgtagagaacaatgaatgagtaacaacgatattaaattcagataggcattttccctcatgagcatagttgatatttataacatatccaaga 34467822  T
Q  456 acatggtcatacctttttccaa 477  Q
    ||| | |||||| ||| |||||    
T  34467823 acaggatcatacttttctccaa 34467844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 34477696 - 34477788
Alignment:
Q  383 agttacaatgatattaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttcc 475  Q
    ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | | ||||||||| ||||    
T  34477696 agttacactgttattaaattcagatagaaattttcactcgtaagtatagttgatatttataacatatccaagaaaaggatcataccttattcc 34477788  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 396 - 475
Target Start/End: Original strand, 34462643 - 34462722
Alignment:
Q  396 ttaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttcc 475  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||   ||||||||||||||    
T  34462643 ttaaattcagatagaaattttctatcgtgagtatagttgatatttataacatatccaagaacaacatcatacctttttcc 34462722  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 474
Target Start/End: Complemental strand, 34372859 - 34372741
Alignment:
Q  356 tttattaaatatagaaaacaatgaatcagttacaatgatattaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaaga 455  Q
    |||||||||| |||| |||||||||| | |||||||||| |||| |||||||||| |||||||||| |||||| | |||||||||||||  ||||||| |    
T  34372859 tttattaaatgtagagaacaatgaataatttacaatgatcttaatttcagatagacattttcactcatgagtacaattgatatttataaattatccaaaa 34372760  T
Q  456 acatggtcatacctttttc 474  Q
     || | |||||||||||||    
T  34372759 gcaggatcatacctttttc 34372741  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 477
Target Start/End: Original strand, 34473755 - 34473849
Alignment:
Q  383 agttacaatgatattaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaa 477  Q
    ||||||||||||||||| |||||||||| ||||| |||| |||| ||| ||||||||||||| ||||| || | || | ||||||||||||||||    
T  34473755 agttacaatgatattaacttcagatagacattttaactcatgagcatatttgatatttataacatatcaaatagcaggatcatacctttttccaa 34473849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 27625894 - 27625948
Alignment:
Q  356 tttattaaatatagaaaacaatgaatcagttacaatgatattaaattcagataga 410  Q
    |||||||||| |||| |||||||||| ||| ||||||| ||||||||||||||||    
T  27625894 tttattaaatgtagagaacaatgaatgagtaacaatgacattaaattcagataga 27625948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 32509978 - 32510052
Alignment:
Q  34 tggcagaacaaaatttctccactaactaaacattacagtgggactcattccaattcacaaagcaagacatcttgt 108  Q
    ||||| |||||||| |||||||  ||||| ||| |||||| |||||||||||||| ||||||  |||||||||||    
T  32509978 tggcacaacaaaatctctccacgcactaaccatcacagtgagactcattccaattaacaaagttagacatcttgt 32510052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 34511667 - 34511721
Alignment:
Q  356 tttattaaatatagaaaacaatgaatcagttacaatgatattaaattcagataga 410  Q
    |||||||||| |||| |||||||||| ||| ||||||| ||||||||||||||||    
T  34511667 tttattaaatgtagagaacaatgaatgagtaacaatgacattaaattcagataga 34511721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 32510108 - 32510157
Alignment:
Q  170 ttccttttatgttgatcttaagtaatcatgtattagttaaacctatatca 219  Q
    ||||||||||||||||||||| |||||||||  ||||||||||| |||||    
T  32510108 ttccttttatgttgatcttaaataatcatgtgctagttaaacctttatca 32510157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 458
Target Start/End: Original strand, 27616650 - 27616721
Alignment:
Q  387 acaatgatattaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaaca 458  Q
    ||||||||||||||||||||||||    ||||||  ||||| ||||| |||||||||| ||||| |||||||    
T  27616650 acaatgatattaaattcagatagactaattcacttatgagtttagtttatatttataacatatctaagaaca 27616721  T

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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 383 - 477
Target Start/End: Original strand, 10533296 - 10533390
Alignment:
Q  383 agttacaatgatattaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaagaacatggtcatacctttttccaa 477  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||  ||||||| | || | ||||||||||||||||    
T  10533296 agttacaatgatattaacttcagatagacattttcactcgtgagtacagttgatatttataacttatccaaaagcaggatcatacctttttccaa 10533390  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 477
Target Start/End: Original strand, 10526460 - 10526581
Alignment:
Q  356 tttattaaatatagaaaacaatgaatcagttacaatgatattaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaaga 455  Q
    ||||||||||  ||| ||||||| || ||||||||| ||||||| |||||||||| |||||||||| |||||| ||||||||||||||   |||| || |    
T  10526460 tttattaaatgcagagaacaatggatgagttacaataatattaacttcagatagatattttcactcatgagtacagttgatatttatagcttatcaaaaa 10526559  T
Q  456 acatggtcatacctttttccaa 477  Q
     || | ||||||||||||||||    
T  10526560 gcaggatcatacctttttccaa 10526581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 477
Target Start/End: Original strand, 454 - 575
Alignment:
Q  356 tttattaaatatagaaaacaatgaatcagttacaatgatattaaattcagatagaaattttcactcgtgagtatagttgatatttataagatatccaaga 455  Q
    ||||||||||  ||| ||||||| || ||||||||| ||||||| |||||||||| |||||||||| |||||| ||||||||||||||   |||| || |    
T  454 tttattaaatgcagagaacaatggatgagttacaataatattaacttcagatagatattttcactcatgagtacagttgatatttatagcttatcaaaaa 553  T
Q  456 acatggtcatacctttttccaa 477  Q
     || | ||||||||||||||||    
T  554 gcaggatcatacctttttccaa 575  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 56339041 - 56338936
Alignment:
Q  34 tggcagaacaaaatttctccactaactaaacattacagtgggactcattccaattcacaaagcaagacatcttgtttacaacaacatc-gcacctctagc 132  Q
    ||||| ||||||||||||||||  ||||||||| | ||| ||||||||||||||| |||||| ||| ||||||||  |||||||||||  ||||||||||    
T  56339041 tggcacaacaaaatttctccacggactaaacatcatagtaggactcattccaattaacaaagtaaggcatcttgtccacaacaacatcaacacctctagc 56338942  T
Q  133 ttaaac 138  Q
    ||||||    
T  56338941 ttaaac 56338936  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 4128837 - 4128902
Alignment:
Q  149 tgttgttactgtccttgagtcttccttttatgttgatcttaagtaatcatgtattagttaaaccta 214  Q
    |||||||||| ||||||| | |||||||||||||| |||||| |||||||||||||||||||||||    
T  4128837 tgttgttactatccttgacttttccttttatgttggtcttaaataatcatgtattagttaaaccta 4128902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 4129084 - 4129137
Alignment:
Q  271 aagctctcttgttatggttaaatataattggttttaaaaatgagcatgtggaga 324  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  4129084 aagctctcttgttatagttaaatatgattggttttaaaaatgagcatgaggaga 4129137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 4100460 - 4100508
Alignment:
Q  262 atatgtaataagctctcttgttatggttaaatataattggttttaaaaa 310  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  4100460 atatgtaaaaagctctcttgttatggttaaatatgattggttttaaaaa 4100508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 4125791 - 4125839
Alignment:
Q  262 atatgtaataagctctcttgttatggttaaatataattggttttaaaaa 310  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  4125791 atatgtaaaaagctctcttgttatggttaaatatgattggttttaaaaa 4125839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 16530024 - 16529979
Alignment:
Q  174 ttttatgttgatcttaagtaatcatgtattagttaaacctatatca 219  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||    
T  16530024 ttttatgttggtcttaaataatcatgtattggttaaacctatatca 16529979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 4099501 - 4099553
Alignment:
Q  149 tgttgttactgtccttgagtcttccttttatgttgatcttaagtaatcatgta 201  Q
    |||||||||| ||||||| | ||||||||||| || |||||| ||||||||||    
T  4099501 tgttgttactatccttgatttttccttttatgctggtcttaaataatcatgta 4099553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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