View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7754_low_1 (Length: 613)
Name: NF7754_low_1
Description: NF7754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7754_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 25 - 597
Target Start/End: Original strand, 10420607 - 10421191
Alignment:
| Q |
25 |
atagtcgtagtattaacctctgatgaatcattataataatgaataatgttttgacatatacctgactaggagttcacccataacaagcagagatattttc |
124 |
Q |
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| T |
10420607 |
atagtcgcagtattaacctctgatgaatcattataataaagaataatgttttgacatatacctgactaggagttcactcataacaagcagcgatattttc |
10420706 |
T |
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| Q |
125 |
tttgatagaacatagatatttgttaatgttgaataagctaacagctgaaatatacgttactcttgctttgagttacattgtgtttgaatttgacacgaag |
224 |
Q |
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| T |
10420707 |
tttgatagaacatagatatttgttaatgttgaataagctaacagctgaaatatacgttactcttgctttgagttacattgtgtttgaatttgacacgaag |
10420806 |
T |
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| Q |
225 |
taggttatcaactacaccccgtgcatgtgtcatgtactgcatgcaaacgtataaaaaatccatatgtattacgtgtaggtttggaaaatgtaaaacccac |
324 |
Q |
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| T |
10420807 |
taggttatcaactacaccccgtgcatgtgtcatgtaccgcatgcaaacgtataaaaaatccatatgtattacgtgtaggtttggaaaatgtaaaacccac |
10420906 |
T |
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| Q |
325 |
acgaacacctagctggaaatgctacaaatgtatatattatatgtacccaaaaaggttacgttagttctcatggtgtagttcaagtggttgaactgagaca |
424 |
Q |
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| T |
10420907 |
acgaacacctagctggaaatgctacaaatgtatatattatatgtaccaaaaaaggttacgttagttctcatggcgtagttcaagtggttgaactgagaca |
10421006 |
T |
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| Q |
425 |
tctagaaaaatctgcataataactttaacttttgaattgaaactt------------tataagttccggtatgtcattatgatgttgggaccattggagt |
512 |
Q |
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| T |
10421007 |
tctagaaaaatctgcataataactttaacttttgaattgaaactttcattacaaatgtataagttccggtatgtcattatgatgttgggaccattggagt |
10421106 |
T |
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| Q |
513 |
tgaagactggtctgtgcttacattctgaatatcatcagttagtttaagtgggtggcagcctcattaatgtaaaggctcaacttac |
597 |
Q |
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| T |
10421107 |
tgaagactggtctgtgcttatattctgaatatcatcagttagtttaagtgggtggcagcctcattaatgtaaaggctcaacttac |
10421191 |
T |
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