View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7754_low_2 (Length: 557)
Name: NF7754_low_2
Description: NF7754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7754_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 4 - 295
Target Start/End: Original strand, 27509057 - 27509348
Alignment:
| Q |
4 |
gagtttggtgttcatggttggatcataatgatcatcaacaaaagaagatgttgtaactgcttgcttttgttgtgcaacattacaatttgccttgttaggt |
103 |
Q |
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| T |
27509057 |
gagtatggtattcatggttggatcataatgatcatcaacaaaagaagatgttgtaactgcttgtttttgttgtgcaacattacaatttgccttgttaggt |
27509156 |
T |
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| Q |
104 |
ttggtatgacttgctctatgtccaccaagtgcttggaatgaagggaaacaacgattgcaagtcttgcattcgtaaagataaaaattcgaagatttgttgt |
203 |
Q |
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| T |
27509157 |
ttggtatgacttgctctatgtccaccaagtgcttggaatgaagggaaacaacgattgcaagtcttgcattcgtaaagataaaaattcgaagatttgttgt |
27509256 |
T |
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| Q |
204 |
tattgtgatctcgatgatttgatagatgtgtgttttgataatcatgacgatgattatgacctcgagctaatagaatgagacaattcgccaaa |
295 |
Q |
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| T |
27509257 |
tattgtgatctcgatgatttgatacatgtgtgttttgataatcatgacgatgattatgacctcgagctaatagaatgagacaattcgccaaa |
27509348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 323 - 535
Target Start/End: Original strand, 27509376 - 27509588
Alignment:
| Q |
323 |
gatcggtcacgcgaatcaattttaacaaactcaattcctcctgaattattgttgttattatcataactcgtaccttcattgcaagaattcgaaacgggca |
422 |
Q |
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| T |
27509376 |
gatcggtcacgcgaatcaattttaacaaactcaattcctcctgaattattgttgttattatcataacttgtaccttcattgcaagaattcgaaacgggca |
27509475 |
T |
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| Q |
423 |
tagttaacctaagtggagatggaagcctttgacgctttgttcgttttcctttaataatttgttgtgtatgatccttggaaaccatcaagacttgatcttc |
522 |
Q |
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| T |
27509476 |
tagttaacctaagtggagatggaagcctttgacgctttgttcgttttcctttaataatttgttgtgtatgatccttggaaaccatcaagacttgatcttc |
27509575 |
T |
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| Q |
523 |
caagacttgcata |
535 |
Q |
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| T |
27509576 |
caagacttgcata |
27509588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 40689748 - 40689708
Alignment:
| Q |
110 |
tgacttgctctatgtccaccaagtgcttggaatgaagggaa |
150 |
Q |
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| T |
40689748 |
tgacttgctctatggccaccaagggcttgaaatgaagggaa |
40689708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 35505996 - 35505932
Alignment:
| Q |
110 |
tgacttgctctatgtccaccaagtgcttggaatgaagggaaacaacgattgcaagtcttgcattc |
174 |
Q |
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| T |
35505996 |
tgacttgctctatgtccacccaacgcttgaaatgaatggaaaaaacggttacaagttttgcattc |
35505932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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