View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7754_low_4 (Length: 423)
Name: NF7754_low_4
Description: NF7754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7754_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 119 - 414
Target Start/End: Original strand, 22922954 - 22923256
Alignment:
| Q |
119 |
aataatagtcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatattctgacatagatgtaaagtgctctggttcttgactggtaagaa |
218 |
Q |
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| T |
22922954 |
aataataatcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatgttctgacatagatgtaaagtgttctggttcttgactggtaagaa |
22923053 |
T |
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| Q |
219 |
aacattacactccatgcaccaaatatcatgtcttcg--tcgagtttctaacgccaaatatcctaa----atatcaacttgtaatgacacatcatcaagta |
312 |
Q |
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| T |
22923054 |
aactttacactcgatgcaccaaatatcatgtcttcgaatcgagtttccaatgccaaatatcctaaatatatatcaacttgtaatgacacatcatcaagta |
22923153 |
T |
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| Q |
313 |
aaatcctacactcctttacctggccctcctcccattccaacaatctacgacgccacatccaagcctcgccaccctca-ccccaccctaataaatcatctc |
411 |
Q |
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||||||| |||||||||| |||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
22923154 |
aaatcctccactcctttaactggtcctcttcccataccaacaatctacgacgccacgtccaagcctcgccaccctcacccccaccttaataaataatctc |
22923253 |
T |
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| Q |
412 |
tgc |
414 |
Q |
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||| |
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| T |
22923254 |
tgc |
22923256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 109 - 321
Target Start/End: Complemental strand, 22924068 - 22923854
Alignment:
| Q |
109 |
cctattacgaaataatagtcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatattctgacatagatgtaaagtgctctggttcttga |
208 |
Q |
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| T |
22924068 |
cctattgcggaataatagtcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatattctgacatcgatgtaaagtgctctcgttcttgg |
22923969 |
T |
|
| Q |
209 |
ctggtaagaaaacattacactccatgcaccaaatatcatgtcttc--gtcgagtttctaacgccaaatatcctaaatatcaacttgtaatgacacatcat |
306 |
Q |
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| T |
22923968 |
ctggtaagaaaactgtacactccacgtaccaaatatcatgtcgtcaaatcgagtttccaacaccaaatatcctaaatatcaacttgcaatgacacatcat |
22923869 |
T |
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| Q |
307 |
caagtaaaatcctac |
321 |
Q |
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|||||||||||||| |
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| T |
22923868 |
gaagtaaaatcctac |
22923854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 22922817 - 22922915
Alignment:
| Q |
18 |
tgagtctattactgtttgattatgacaccattgttt---------gattagtttcacacccgctcgtgcagagtgtagactccaaagggatgataagtc |
107 |
Q |
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| T |
22922817 |
tgagtctattactgtttgattatgataccattgtttgattagtttgattagtttcacacccactcgtgcagagtgtagactcaaaagggatgataagtc |
22922915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 22924193 - 22924148
Alignment:
| Q |
17 |
atgagtctattactgtttgattatgacaccattgtttgattagttt |
62 |
Q |
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| T |
22924193 |
atgagtctactattgtttgattatgacaccattgtttgattagttt |
22924148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 11527784 - 11527727
Alignment:
| Q |
337 |
cctcctcccattccaacaatctacgacgccacatccaagcctcgccaccctcacccca |
394 |
Q |
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||||||||||| ||||||| ||||| ||||| | || |||||||||||||||||||| |
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| T |
11527784 |
cctcctcccataccaacaacatacgatgccactttcatgcctcgccaccctcacccca |
11527727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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