View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7754_low_6 (Length: 372)

Name: NF7754_low_6
Description: NF7754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7754_low_6
NF7754_low_6
[»] chr4 (17 HSPs)
chr4 (157-348)||(22289967-22290157)
chr4 (160-352)||(33690278-33690471)
chr4 (143-210)||(16904950-16905017)
chr4 (144-196)||(18209689-18209741)
chr4 (143-210)||(44376077-44376144)
chr4 (147-210)||(46256198-46256261)
chr4 (143-210)||(52434788-52434855)
chr4 (143-185)||(35760770-35760812)
chr4 (144-210)||(39058356-39058422)
chr4 (144-210)||(47142799-47142865)
chr4 (145-210)||(12090459-12090524)
chr4 (145-210)||(30824922-30824987)
chr4 (144-185)||(31965968-31966009)
chr4 (145-210)||(33139471-33139536)
chr4 (145-210)||(37590804-37590869)
chr4 (145-210)||(37651830-37651895)
chr4 (144-185)||(53143261-53143302)
[»] chr6 (12 HSPs)
chr6 (144-319)||(15432336-15432511)
chr6 (144-210)||(1405562-1405628)
chr6 (144-210)||(3593057-3593123)
chr6 (145-210)||(13533931-13533996)
chr6 (144-196)||(162668-162720)
chr6 (144-210)||(2266940-2267006)
chr6 (144-210)||(12597264-12597330)
chr6 (157-210)||(6300721-6300774)
chr6 (157-210)||(6307531-6307584)
chr6 (145-210)||(33646106-33646171)
chr6 (145-185)||(8539742-8539782)
chr6 (145-185)||(28099597-28099637)
[»] chr5 (14 HSPs)
chr5 (18-143)||(32075647-32075767)
chr5 (144-210)||(1396153-1396219)
chr5 (145-210)||(20655049-20655114)
chr5 (143-210)||(2398940-2399007)
chr5 (143-210)||(10729440-10729507)
chr5 (143-210)||(34107336-34107403)
chr5 (144-210)||(16526305-16526371)
chr5 (152-210)||(33375928-33375986)
chr5 (144-210)||(38246864-38246930)
chr5 (145-210)||(20874852-20874917)
chr5 (157-210)||(25099248-25099301)
chr5 (157-210)||(25158338-25158391)
chr5 (145-210)||(34110816-34110881)
chr5 (145-210)||(40177205-40177270)
[»] chr7 (17 HSPs)
chr7 (169-294)||(21680989-21681114)
chr7 (143-290)||(21651462-21651609)
chr7 (160-345)||(21713499-21713688)
chr7 (144-210)||(16376544-16376610)
chr7 (270-348)||(40674298-40674376)
chr7 (145-210)||(13786334-13786399)
chr7 (142-210)||(42242151-42242219)
chr7 (143-210)||(21804570-21804637)
chr7 (143-210)||(27903415-27903482)
chr7 (143-210)||(33916945-33917012)
chr7 (270-348)||(21314280-21314358)
chr7 (144-210)||(40969055-40969121)
chr7 (145-210)||(21670145-21670210)
chr7 (144-185)||(31373645-31373686)
chr7 (143-212)||(32661031-32661100)
chr7 (145-210)||(38163339-38163404)
chr7 (145-185)||(21342012-21342052)
[»] scaffold0019 (2 HSPs)
scaffold0019 (157-329)||(177839-178010)
scaffold0019 (169-217)||(149046-149094)
[»] chr8 (13 HSPs)
chr8 (143-210)||(28583019-28583086)
chr8 (144-210)||(11725354-11725420)
chr8 (144-210)||(39997855-39997921)
chr8 (270-343)||(18850765-18850838)
chr8 (142-210)||(32110858-32110926)
chr8 (143-210)||(18175545-18175612)
chr8 (144-210)||(995814-995880)
chr8 (144-210)||(10478101-10478167)
chr8 (144-210)||(30473883-30473949)
chr8 (145-210)||(6299020-6299085)
chr8 (145-210)||(15961296-15961361)
chr8 (145-210)||(24409040-24409105)
chr8 (145-185)||(23353622-23353662)
[»] chr3 (16 HSPs)
chr3 (143-210)||(6460166-6460233)
chr3 (144-210)||(36076453-36076519)
chr3 (145-210)||(4584434-4584499)
chr3 (145-210)||(26948962-26949027)
chr3 (143-210)||(38653925-38653992)
chr3 (143-185)||(5561551-5561593)
chr3 (144-210)||(12264364-12264430)
chr3 (144-210)||(43363610-43363676)
chr3 (145-210)||(1941720-1941785)
chr3 (145-210)||(3898586-3898651)
chr3 (145-210)||(34121519-34121584)
chr3 (145-210)||(49672726-49672791)
chr3 (145-185)||(21098493-21098533)
chr3 (145-185)||(40014653-40014693)
chr3 (277-348)||(46921552-46921624)
chr3 (142-210)||(49506346-49506414)
[»] chr2 (8 HSPs)
chr2 (144-210)||(8700425-8700491)
chr2 (144-210)||(19596362-19596428)
chr2 (143-210)||(18351715-18351782)
chr2 (143-210)||(27944794-27944861)
chr2 (144-210)||(6120716-6120782)
chr2 (144-185)||(20545014-20545055)
chr2 (145-210)||(41664674-41664739)
chr2 (145-210)||(44902245-44902310)
[»] chr1 (12 HSPs)
chr1 (145-210)||(1231960-1232025)
chr1 (143-185)||(9216220-9216262)
chr1 (144-210)||(34888685-34888751)
chr1 (152-210)||(35614231-35614289)
chr1 (145-210)||(4266545-4266610)
chr1 (145-210)||(18706509-18706574)
chr1 (144-185)||(18855232-18855273)
chr1 (145-210)||(29942182-29942247)
chr1 (145-210)||(31018200-31018265)
chr1 (145-210)||(38913747-38913812)
chr1 (145-185)||(2951366-2951406)
chr1 (144-212)||(29387886-29387954)
[»] scaffold0515 (1 HSPs)
scaffold0515 (145-185)||(6061-6101)
[»] scaffold0306 (1 HSPs)
scaffold0306 (145-185)||(6071-6111)
[»] scaffold0031 (1 HSPs)
scaffold0031 (144-210)||(46438-46504)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 157 - 348
Target Start/End: Original strand, 22289967 - 22290157
Alignment:
Q  157 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaata 256  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||    
T  22289967 acccgtgctgccgcacgagtcatatacattgaaaatgtagaaggcaaaaacaaaatgacatattgcatacc-atcttaaaatcttaacattatactaata 22290065  T
Q  257 aatacaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacaccatc 348  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22290066 aatacaattatatttgtatttttttatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaaaaccatc 22290157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 352
Target Start/End: Complemental strand, 33690471 - 33690278
Alignment:
Q  160 cgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaataaat 259  Q
    |||||||| ||| | |||||||| ||||||||||||| ||| |||||||||||||||| ||| ||||| | |||||||  |||| |||||  |||| |||    
T  33690471 cgtgctgctgcaggagtcatatatatcgaaaatgtagtaggtaaaaacaaaatgacat-ttatataccaagcttaaaactttaacgttatgataattaat 33690373  T
Q  260 acaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagt--actatcaatgcaaacaccatcctca 352  Q
     |||||||||||||||   ||||||| || ||||||  ||||  ||||||||||||||| | ||||||  |||||||||||||| | ||||||||    
T  33690372 gcaattatatttgaaggaattcatgtttatacattgcagaaatattctttgaaaactacgtttgaagtacactatcaatgcaaagatcatcctca 33690278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 16904950 - 16905017
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  16904950 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 16905017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 18209741 - 18209689
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtag 196  Q
    ||||||| |||| ||||||||||| |||||||||||||||||  |||||||||    
T  18209741 aactagactttccacccgtgctgccgcacgggtcatatacattcaaaatgtag 18209689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 44376077 - 44376144
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||||  || ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  44376077 taactagatcgtccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 44376144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 46256261 - 46256198
Alignment:
Q  147 tagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  46256261 tagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 46256198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 52434855 - 52434788
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  52434855 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 52434788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 35760812 - 35760770
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||    
T  35760812 taactagattttccacccgtgctgccgcacgagtcatatacat 35760770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 39058356 - 39058422
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||||||| ||| ||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  39058356 aactagattttccacctgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 39058422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 47142799 - 47142865
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| |||| |||||||||||| | | |||||| || ||||||||||    
T  47142799 aactagactttccacccgtgctgccgcactggtcatatacattgtagatgtagtagacaaaaacaaa 47142865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 12090459 - 12090524
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  12090459 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12090524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 30824922 - 30824987
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  30824922 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 30824987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 31965968 - 31966009
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  31965968 aactagactttccacccgtgctgccgcacgggtcatatacat 31966009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 33139471 - 33139536
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  33139471 actagactttccacccgtgctgccgcacgggtcatatacattgtagatttagtagacaaaaacaaa 33139536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 37590804 - 37590869
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||| ||||    
T  37590804 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaatcaaa 37590869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 37651895 - 37651830
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  37651895 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 37651830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 53143261 - 53143302
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    |||||||||||  ||||||||||| |||||||||||||||||    
T  53143261 aactagatttttcacccgtgctgccgcacgggtcatatacat 53143302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 144 - 319
Target Start/End: Original strand, 15432336 - 15432511
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaa 243  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  15432336 aactagactttctacccgtgcggccgcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaagtgacatattacatacccaacttaaaatcttaa 15432435  T
Q  244 tgttatactaataaatacaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactaca 319  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||    
T  15432436 tgttatcctaataaatacaattatattggaagtttttcatgtctacacatcgtggaaagtttctttgaaaattaca 15432511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 1405562 - 1405628
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||||||| ||||||||||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  1405562 aactagattttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 1405628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 3593123 - 3593057
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  3593123 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 3593057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 13533996 - 13533931
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||||||| ||||||||||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  13533996 actagattttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 13533931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 162668 - 162720
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtag 196  Q
    ||||||| |||| ||||||||||| |||||||||||||||||  |||||||||    
T  162668 aactagactttccacccgtgctgccgcacgggtcatatacattcaaaatgtag 162720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 2267006 - 2266940
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  2267006 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 2266940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 12597264 - 12597330
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  12597264 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12597330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 6300721 - 6300774
Alignment:
Q  157 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||||||| ||||||||||||||||| | | || ||| |||||||||||||    
T  6300721 acccgtgctgccgcacgggtcatatacattgtatatctagtaggcaaaaacaaa 6300774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 6307531 - 6307584
Alignment:
Q  157 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||||||| ||||||||||||||||| | | || ||| |||||||||||||    
T  6307531 acccgtgctgccgcacgggtcatatacattgtatatctagtaggcaaaaacaaa 6307584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 33646171 - 33646106
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  33646171 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 33646106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 8539782 - 8539742
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  8539782 actagactttccacccgtgctgccgcacgggtcatatacat 8539742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 28099597 - 28099637
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  28099597 actagactttccacccgtgctgccgcacgggtcatatacat 28099637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 32075647 - 32075767
Alignment:
Q  18 ataacatacacgtttgtcaccattttctgtcatacacaatttagttaatatcacaaaatttcacaattagataagaaaaccatgcattttttattttatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  32075647 ataacatacacgtttgtcaccattttctgtcatacacaatttagttaatatcacaaaatttcacaattagataagaaaaccatgcatt-----ttttatt 32075741  T
Q  118 taagatcatctacaacattgtgaggt 143  Q
    ||||||||||||||||||||||||||    
T  32075742 taagatcatctacaacattgtgaggt 32075767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 1396219 - 1396153
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||| |||||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  1396219 aactatattttccacccgtgctgccgcacgggtcatatacattgcagatgtagcagacaaaaacaaa 1396153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 20655049 - 20655114
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  20655049 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 20655114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 2398940 - 2399007
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  2398940 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 2399007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 10729440 - 10729507
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  10729440 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 10729507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 34107336 - 34107403
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34107336 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34107403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 16526305 - 16526371
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  16526305 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 16526371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 33375986 - 33375928
Alignment:
Q  152 tttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  33375986 tttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 33375928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 38246864 - 38246930
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38246864 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38246930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 20874917 - 20874852
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  20874917 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 20874852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 25099248 - 25099301
Alignment:
Q  157 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  25099248 acccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 25099301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 25158338 - 25158391
Alignment:
Q  157 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  25158338 acccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 25158391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 34110881 - 34110816
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34110881 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34110816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 40177270 - 40177205
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  40177270 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 40177205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 21681114 - 21680989
Alignment:
Q  169 gcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaataaatacaattata 268  Q
    ||||||||||||||||||| |||||||| || |||||| ||||| | |||  ||||||||| |||| ||| |||||||||||  ||||||||||||||||    
T  21681114 gcacgggtcatatacatcgtaaatgtagtagacaaaaataaaattatatagcacatacccaacttataattttaatgttataagaataaatacaattata 21681015  T
Q  269 tttgaagtttttcatgtctacacatt 294  Q
    |||||||||| |||||| ||||||||    
T  21681014 tttgaagtttctcatgtttacacatt 21680989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 290
Target Start/End: Complemental strand, 21651609 - 21651462
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatctta 242  Q
    |||||||||  |||||||||| | |  || ||||||||||||| | ||||| |  || || || |||||| | ||| ||| |||||| |||| ||| |||    
T  21651609 taactagatggtctacccgtgatacaacatgggtcatatacattgtaaatgcaatagacagaagcaaaattagatagtacttacccaacttataatttta 21651510  T
Q  243 atgttatactaataaatacaattatatttgaagtttttcatgtctaca 290  Q
    |||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  21651509 atgttataataataaatacaattatatttgaagtttctcatgtttaca 21651462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 345
Target Start/End: Complemental strand, 21713688 - 21713499
Alignment:
Q  160 cgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaataaat 259  Q
    |||||| | ||| |||||||||||| || | |||||| ||  |||| |||||| | ||| |||||||| || ||| ||| ||||||||||| ||||||||    
T  21713688 cgtgctaccgcatgggtcatatacaccgtagatgtagtagataaaagcaaaattatatagtacataccaattttataattttaatgttataataataaat 21713589  T
Q  260 aca--attatatttgaagtttttcatgtctacacattgt--ggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacacc 345  Q
    |||  ||||||||||||||||  ||||| |||||||| |  | ||| |||||||  | |||||||   ||||||||| ||||||||||||    
T  21713588 acaatattatatttgaagtttcccatgtttacacattcttcgaaaaatttctttatacactacattcaaagtactataaatgcaaacacc 21713499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 16376544 - 16376610
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  16376544 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 16376610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 40674298 - 40674376
Alignment:
Q  270 ttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacaccatc 348  Q
    |||||||||||| ||||||| ||||  ||||| ||||||| || |||||||  |||| || ||||||||||||||||||    
T  40674298 ttgaagtttttcgtgtctacgcatttcggaaaatttctttaaacactacattcgaagaaccatcaatgcaaacaccatc 40674376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 13786399 - 13786334
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  13786399 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 13786334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 42242151 - 42242219
Alignment:
Q  142 gtaactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  42242151 gtaactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 42242219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 21804570 - 21804637
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  21804570 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 21804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 27903415 - 27903482
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| |||||||||||||| || | | |||||| || ||||||||||    
T  27903415 taactagactttccacccgtgctgccgcacgggtcatatatattgtagatgtagtagacaaaaacaaa 27903482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 33916945 - 33917012
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  33916945 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 33917012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 21314280 - 21314358
Alignment:
Q  270 ttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaacaccatc 348  Q
    ||||| |||||| ||||||| ||||  | ||| ||||||| || |||||||  |||| |||||||||||||||||||||    
T  21314280 ttgaaatttttcgtgtctacgcatttcgaaaaatttctttaaacactacattcgaagaactatcaatgcaaacaccatc 21314358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 40969121 - 40969055
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || || |||||||    
T  40969121 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacacaaacaaa 40969055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 21670210 - 21670145
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| |||| |||||||||||| | | |||||| || ||||||||||    
T  21670210 actagactttccacccgtgctgccgcacaggtcatatacattgtagatgtagtagacaaaaacaaa 21670145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 31373686 - 31373645
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  31373686 aactagactttccacccgtgctgccgcacgggtcatatacat 31373645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 32661100 - 32661031
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaat 212  Q
    |||||||||  |||||||||||||| ||||| ||||||||||| | || ||||| || ||||| ||||||    
T  32661100 taactagatcgtctacccgtgctgccgcacgagtcatatacattgtaagtgtagtagacaaaagcaaaat 32661031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 38163339 - 38163404
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38163339 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38163404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 21342052 - 21342012
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  21342052 actagactttccacccgtgctgccgcacgggtcatatacat 21342012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 157 - 329
Target Start/End: Original strand, 177839 - 178010
Alignment:
Q  157 acccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacatattacatacccatcttaaaatcttaatgttatactaata 256  Q
    |||||||||||  ||||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||  | |||| ||  |||| || ||  ||||     
T  177839 acccgtgctgccacacgggtcatatatatcgaaaatgtagcaggcaaaaacaaaatgacat-ttatatacgaagcttagaactttaacgtcatgataatt 177937  T
Q  257 aatacaattatatttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtac 329  Q
    ||| ||||||||||||| |   ||||||| || ||||||  |||| ||| |||||||||||| | ||||||||    
T  177938 aatgcaattatatttgagggaattcatgtttatacattgcagaaaatttgtttgaaaactacgtttgaagtac 178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 149046 - 149094
Alignment:
Q  169 gcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaatgacat 217  Q
    |||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  149046 gcacgggtcatatatatcgaaaatgtagcaggcgaaaacaaaatgacat 149094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 28583086 - 28583019
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  28583086 taactagattttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 28583019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 11725420 - 11725354
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  11725420 aactagactttccacccgtgctgctgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 11725354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 39997921 - 39997855
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  39997921 aactagaatttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 39997855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 18850765 - 18850838
Alignment:
Q  270 ttgaagtttttcatgtctacacattgtggaaagtttctttgaaaactacatctgaagtactatcaatgcaaaca 343  Q
    ||||||| ||| |||||||| |||| |||||| ||||||| || |||||||  |||| ||||||||||||||||    
T  18850765 ttgaagtcttttatgtctacgcattttggaaaatttctttaaacactacattcgaagaactatcaatgcaaaca 18850838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 32110858 - 32110926
Alignment:
Q  142 gtaactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  32110858 gtaactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 32110926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 18175612 - 18175545
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  18175612 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18175545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 995814 - 995880
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  995814 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 995880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 10478167 - 10478101
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  10478167 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 10478101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 30473883 - 30473949
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  30473883 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 30473949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 6299020 - 6299085
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  6299020 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 6299085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 15961361 - 15961296
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  15961361 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 15961296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 24409105 - 24409040
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||||||||||| ||| ||||||||||||||||| | | |||||| ||  |||||||||    
T  24409105 actagactttctacccgtgttgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 24409040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 23353622 - 23353662
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  23353622 actagactttccacccgtgctgccgcacgggtcatatacat 23353662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 6460166 - 6460233
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  6460166 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 6460233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 36076453 - 36076519
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  36076453 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 36076519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 4584434 - 4584499
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  4584434 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 4584499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 26949027 - 26948962
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  26949027 actagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 26948962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 38653925 - 38653992
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38653925 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38653992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 5561551 - 5561593
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    |||||||||  |||||||||||||| |||||||||||||||||    
T  5561551 taactagatcgtctacccgtgctgccgcacgggtcatatacat 5561593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 12264430 - 12264364
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  12264430 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12264364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 43363610 - 43363676
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  43363610 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 43363676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 1941720 - 1941785
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  1941720 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 1941785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 3898651 - 3898586
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  3898651 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 3898586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 34121584 - 34121519
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34121584 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34121519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 49672791 - 49672726
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  49672791 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 49672726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 21098533 - 21098493
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  21098533 actagactttccacccgtgctgccgcacgggtcatatacat 21098493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 40014653 - 40014693
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  40014653 actagactttccacccgtgctgccgcacgggtcatatacat 40014693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 348
Target Start/End: Original strand, 46921552 - 46921624
Alignment:
Q  277 ttttcatgtctacacattgtggaaagtttctttgaaaact-acatctgaagtactatcaatgcaaacaccatc 348  Q
    ||||| |||||||||||| |||||  ||| ||| || ||| ||||  ||||||||||||||||||||||||||    
T  46921552 ttttcgtgtctacacattttggaatttttttttaaacacttacattcgaagtactatcaatgcaaacaccatc 46921624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 49506346 - 49506414
Alignment:
Q  142 gtaactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||||| |||| |||||| |||| ||||||||||||||||| | | || ||| || ||||||||||    
T  49506346 gtaactagactttccacccgtactgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 49506414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 8700491 - 8700425
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  8700491 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 8700425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 19596362 - 19596428
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | |||||| || ||||||||||    
T  19596362 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 19596428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 18351782 - 18351715
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  18351782 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18351715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 27944794 - 27944861
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  27944794 taactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 27944861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 6120782 - 6120716
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  6120782 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 6120716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 20545055 - 20545014
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  20545055 aactagactttccacccgtgctgccgcacgggtcatatacat 20545014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 41664739 - 41664674
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  41664739 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 41664674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 44902310 - 44902245
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  44902310 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 44902245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 1232025 - 1231960
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | |||| ||| || ||||||||||    
T  1232025 actagactttccacccgtgctgccgcacgggtcatatacattgtaaatatagtagacaaaaacaaa 1231960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 9216262 - 9216220
Alignment:
Q  143 taactagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    |||||||| |||| ||||||||||| |||||||||||||||||    
T  9216262 taactagactttccacccgtgctgccgcacgggtcatatacat 9216220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 34888685 - 34888751
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  34888685 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34888751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 35614289 - 35614231
Alignment:
Q  152 tttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||| ||||||||| | ||||||||||||||||| | |||||||| || ||||||||||    
T  35614289 tttccacccgtgctaccgcacgggtcatatacattgtaaatgtagtagacaaaaacaaa 35614231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 4266610 - 4266545
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  4266610 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 4266545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 18706509 - 18706574
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||| ||||||||||| | | |||||| || ||||||||||    
T  18706509 actagactttccacccgtgctgccgcacgagtcatatacattgtagatgtagtagacaaaaacaaa 18706574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 18855232 - 18855273
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  18855232 aactagactttccacccgtgctgccgcacgggtcatatacat 18855273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 29942247 - 29942182
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  29942247 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 29942182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 31018200 - 31018265
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  31018200 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 31018265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 38913747 - 38913812
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    |||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  38913747 actagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38913812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 2951366 - 2951406
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  2951366 actagactttccacccgtgctgccgcacgggtcatatacat 2951406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 29387886 - 29387954
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaaat 212  Q
    ||||||||  || |||||| |||| ||||||||||||||||| | || ||||| || ||||||||||||    
T  29387886 aactagatcgtccacccgtactgccgcacgggtcatatacattgtaagtgtagtagacaaaaacaaaat 29387954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 6061 - 6101
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  6061 actagattttccacccgtgctgccgcacgggtcatatacat 6101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 6071 - 6111
Alignment:
Q  145 actagattttctacccgtgctgcggcacgggtcatatacat 185  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  6071 actagattttccacccgtgctgccgcacgggtcatatacat 6111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 46504 - 46438
Alignment:
Q  144 aactagattttctacccgtgctgcggcacgggtcatatacatcgaaaatgtagaaggcaaaaacaaa 210  Q
    ||||||| |||| ||||||||||| ||||||||||||||||| | | || ||| || ||||||||||    
T  46504 aactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 46438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University