View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7754_low_8 (Length: 286)
Name: NF7754_low_8
Description: NF7754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7754_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 29827737 - 29827991
Alignment:
| Q |
16 |
ataaaagtaatatttttgctataatataatcttcttctgcgatagtttttaacatccttgcgagttgttttatgtggggtgtagattcatgtaccttact |
115 |
Q |
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| T |
29827737 |
ataaaagtaatatttttgctataatataatcttcttctgcgacagtttttaacatccttgcgagttgttttatgtggggtgtagattcatgtaccttact |
29827836 |
T |
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| Q |
116 |
atttgactccaacatcgataaaatcgacaacctcgatgaagtttcccaatggttccaaccggtgaactccgtcttcattgacattaaaaatgatattctc |
215 |
Q |
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| T |
29827837 |
atttgactccaacatcgataaaatcgacaacctggatgaagttttccaatggttccaactggtgaactccgtcttcattgacattaaaaatgatattctc |
29827936 |
T |
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| Q |
216 |
accgatcttaaggagaaccaattctcctatcatgctcatctgaaacatttatttg |
270 |
Q |
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| T |
29827937 |
accgatcttaaggagaaccaattctcttgtcatgctcatctgaaacatttatttg |
29827991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 17555723 - 17555657
Alignment:
| Q |
72 |
cttgcgagttgttttatgtggggtgtagattcatgtaccttactatttgactccaacatcgataaaa |
138 |
Q |
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| T |
17555723 |
cttgcgagttgttttatgtgtggtgcagattcaggtacctttgtattcgactctgatatcgataaaa |
17555657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 14405117 - 14405056
Alignment:
| Q |
77 |
gagttgttttatgtggggtgtagattcatgtaccttactatttgactccaacatcgataaaa |
138 |
Q |
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| T |
14405117 |
gagttgttttatgtgtggtgcaaattcaagtaccttgctatttgactacgtcatcgataaaa |
14405056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 18497525 - 18497589
Alignment:
| Q |
75 |
gcgagttgttttatgtggggtgtagattcatgtaccttactatttgactccaacatcgataaaat |
139 |
Q |
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| T |
18497525 |
gcgacttgttttatgtgtggtaaaaattcaggtaccttactatttaactcatacatcgataaaat |
18497589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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